File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110875ms, 91.93% of 120604ms total Dropped 1104 nodes (cum <= 603.02ms) flat flat% sum% cum cum% 0 0% 0% 120586ms 100% __libc_start_call_main 0 0% 0% 120586ms 100% __libc_start_main_impl 0 0% 0% 120586ms 100% _start 0 0% 0% 120584ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120584ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120584ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120584ms 100% main 0 0% 0% 120548ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120548ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120548ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120548ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120548ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120548ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 6ms 0.005% 0.005% 119302ms 98.92% AbstractCardiacProblem::Solve 6ms 0.005% 0.0099% 118506ms 98.26% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0041% 0.014% 66876ms 55.45% LinearSystem::Solve 1ms 0.00083% 0.015% 66363ms 55.03% KSPSolve 15ms 0.012% 0.027% 66363ms 55.03% KSPSolve_Private 11ms 0.0091% 0.036% 65924ms 54.66% KSPSolve_SYMMLQ 196ms 0.16% 0.2% 42584ms 35.31% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.2% 36755ms 30.48% PCApply 2ms 0.0017% 0.2% 36746ms 30.47% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.2% 34189ms 28.35% KSPSolve_PREONLY (partial-inline) 7ms 0.0058% 0.21% 33110ms 27.45% MatSolve 0 0% 0.21% 33110ms 27.45% PCApply_ICC 32650ms 27.07% 27.28% 33103ms 27.45% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1322ms 1.10% 28.38% 32519ms 26.96% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 28.38% 31715ms 26.30% KSP_PCApply.lto_priv.18 6877ms 5.70% 34.08% 28097ms 23.30% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 10ms 0.0083% 34.09% 23592ms 19.56% MatMult 219ms 0.18% 34.27% 23582ms 19.55% MatMult_SeqAIJ (partial-inline) 23073ms 19.13% 53.40% 23582ms 19.55% MatMult_SeqAIJ_Inode (inline) 1974ms 1.64% 55.04% 14509ms 12.03% CardiacNewtonSolver::Solve 313ms 0.26% 55.30% 9255ms 7.67% AbstractCardiacTissue::UpdateCaches (inline) 1976ms 1.64% 56.94% 8735ms 7.24% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4305ms 3.57% 60.51% 8461ms 7.02% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1095ms 0.91% 61.41% 8032ms 6.66% BidomainSolver::SetupLinearSystem 1259ms 1.04% 62.46% 7472ms 6.20% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00083% 62.46% 7001ms 5.80% KSP_PCApply (partial-inline) 2ms 0.0017% 62.46% 6448ms 5.35% KSPConvergedDefault 5953ms 4.94% 67.40% 5953ms 4.94% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3816ms 3.16% 70.56% 3853ms 3.19% __ieee754_log_fma 0 0% 70.56% 3679ms 3.05% boost::numeric::ublas::norm_inf (inline) 2511ms 2.08% 72.64% 3679ms 3.05% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.64% 3679ms 3.05% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.64% 3679ms 3.05% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 10ms 0.0083% 72.65% 3354ms 2.78% MatNullSpaceRemove 33ms 0.027% 72.68% 3165ms 2.62% std::pow (inline) 394ms 0.33% 73.01% 3126ms 2.59% __pow 3059ms 2.54% 75.54% 3059ms 2.54% __memcpy_avx_unaligned_erms 0 0% 75.54% 3018ms 2.50% PetscMemcpy (inline) 2949ms 2.45% 77.99% 2949ms 2.45% ddot_ 1787ms 1.48% 79.47% 2914ms 2.42% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 375ms 0.31% 79.78% 2724ms 2.26% __ieee754_pow_fma 15ms 0.012% 79.79% 2600ms 2.16% VecCopy 0 0% 79.79% 2582ms 2.14% VecCopy_Seq (partial-inline) 6ms 0.005% 79.80% 2435ms 2.02% VecDot 0 0% 79.80% 2429ms 2.01% VecDot_Seq 1ms 0.00083% 79.80% 2429ms 2.01% VecXDot_Seq_Private.constprop.0 7ms 0.0058% 79.80% 2400ms 1.99% VecAXPY 4ms 0.0033% 79.81% 2393ms 1.98% VecAXPY_Seq 2368ms 1.96% 81.77% 2368ms 1.96% daxpy_ 2ms 0.0017% 81.77% 2069ms 1.72% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.77% 1895ms 1.57% VecMDot 12ms 0.0099% 81.78% 1893ms 1.57% VecMXDot_Private 1869ms 1.55% 83.33% 1876ms 1.56% VecMDot_Seq 20ms 0.017% 83.35% 1729ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1579ms 1.31% 84.66% 1633ms 1.35% exp_inline (inline) 1480ms 1.23% 85.89% 1480ms 1.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 6ms 0.005% 85.89% 1449ms 1.20% VecMAXPY 1435ms 1.19% 87.08% 1443ms 1.20% VecMAXPY_Seq 0 0% 87.08% 1419ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 6ms 0.005% 87.09% 1141ms 0.95% boost::numeric::ublas::matrix_assign (inline) 213ms 0.18% 87.26% 1128ms 0.94% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.26% 1098ms 0.91% CuboidMeshConstructor::Construct 0 0% 87.26% 1097ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 87.26% 1097ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 1092ms 0.91% 88.17% 1092ms 0.91% __memset_avx2_unaligned_erms 0 0% 88.17% 1083ms 0.9% PetscMemzero (inline) 5ms 0.0041% 88.17% 1080ms 0.9% KSP_RemoveNullSpace (inline) 792ms 0.66% 88.83% 1075ms 0.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.83% 1070ms 0.89% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.83% 1070ms 0.89% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.83% 1070ms 0.89% boost_numeric_ublas_abs (inline) 1070ms 0.89% 89.72% 1070ms 0.89% std::abs (inline) 2ms 0.0017% 89.72% 979ms 0.81% Element::Element 0 0% 89.72% 969ms 0.8% AbstractTetrahedralElement::CalculateJacobian 0 0% 89.72% 933ms 0.77% VecDuplicate 4ms 0.0033% 89.72% 928ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 0 0% 89.72% 894ms 0.74% BidomainAssembler::ComputeMatrixTerm 878ms 0.73% 90.45% 878ms 0.73% [libchaste_heart.so] 11ms 0.0091% 90.46% 878ms 0.73% boost::numeric::ublas::c_matrix::c_matrix (inline) 7ms 0.0058% 90.47% 851ms 0.71% VecScale 2ms 0.0017% 90.47% 844ms 0.7% VecScale_Seq 839ms 0.7% 91.16% 839ms 0.7% dscal_ 12ms 0.0099% 91.17% 789ms 0.65% PetscMallocA 10ms 0.0083% 91.18% 777ms 0.64% PetscMallocAlign (partial-inline) 2ms 0.0017% 91.18% 777ms 0.64% VecNorm 1ms 0.00083% 91.18% 770ms 0.64% VecNorm_Seq 3ms 0.0025% 91.19% 747ms 0.62% BidomainProblem::WriteOneStep 1ms 0.00083% 91.19% 713ms 0.59% AbstractBidomainSolver::FinaliseLinearSystem 219ms 0.18% 91.37% 711ms 0.59% AbstractBidomainSolver::CheckCompatibilityCondition 681ms 0.56% 91.93% 681ms 0.56% log_inline (inline) 0 0% 91.93% 650ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)