File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 2859ms, 86.48% of 3306ms total Dropped 410 nodes (cum <= 16.53ms) flat flat% sum% cum cum% 0 0% 0% 3300ms 99.82% __libc_start_call_main 0 0% 0% 3300ms 99.82% __libc_start_main_impl 0 0% 0% 3300ms 99.82% _start 0 0% 0% 3298ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3298ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3298ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3298ms 99.76% main 0 0% 0% 3258ms 98.55% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3258ms 98.55% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3258ms 98.55% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 0 0% 0% 3251ms 98.34% AbstractCardiacProblem::Solve 1ms 0.03% 0.03% 3237ms 97.91% AbstractDynamicLinearPdeSolver::Solve 1ms 0.03% 0.06% 1721ms 52.06% LinearSystem::Solve 0 0% 0.06% 1679ms 50.79% KSPSolve 4ms 0.12% 0.18% 1679ms 50.79% KSPSolve_Private 1ms 0.03% 0.21% 1647ms 49.82% KSPSolve_CG 8ms 0.24% 0.45% 1236ms 37.39% AbstractCardiacTissue::SolveCellSystems 4ms 0.12% 0.57% 1043ms 31.55% PCApply 3ms 0.091% 0.67% 1032ms 31.22% PCApply_BJacobi_Singleblock 0 0% 0.67% 857ms 25.92% KSPSolve_PREONLY (partial-inline) 0 0% 0.67% 856ms 25.89% KSP_PCApply.lto_priv.7 39ms 1.18% 1.85% 845ms 25.56% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 1.85% 800ms 24.20% MatSolve 0 0% 1.85% 800ms 24.20% PCApply_ICC 792ms 23.96% 25.80% 795ms 24.05% MatSolve_SeqSBAIJ_1_NaturalOrdering 165ms 4.99% 30.79% 758ms 22.93% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 2ms 0.06% 30.85% 455ms 13.76% MatMult 15ms 0.45% 31.31% 448ms 13.55% MatMult_SeqAIJ (partial-inline) 428ms 12.95% 44.25% 448ms 13.55% MatMult_SeqAIJ_Inode (inline) 6ms 0.18% 44.43% 350ms 10.59% AbstractCardiacTissue::UpdateCaches (inline) 37ms 1.12% 45.55% 326ms 9.86% CardiacNewtonSolver::Solve 100ms 3.02% 48.58% 321ms 9.71% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4ms 0.12% 48.70% 283ms 8.56% KSPConvergedDefault 0 0% 48.70% 272ms 8.23% KSP_PCApply (partial-inline) 37ms 1.12% 49.82% 242ms 7.32% BidomainSolver::SetupLinearSystem 112ms 3.39% 53.21% 197ms 5.96% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 9ms 0.27% 53.48% 178ms 5.38% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 53.48% 165ms 4.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 28ms 0.85% 54.33% 165ms 4.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 23ms 0.7% 55.02% 164ms 4.96% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.06% 55.08% 157ms 4.75% MatNullSpaceRemove 135ms 4.08% 59.17% 135ms 4.08% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 118ms 3.57% 62.73% 118ms 3.57% ddot_ 43ms 1.30% 64.04% 110ms 3.33% __GI___exp 108ms 3.27% 67.30% 109ms 3.30% __ieee754_log_fma 0 0% 67.30% 98ms 2.96% VecMDot 6ms 0.18% 67.48% 98ms 2.96% VecMXDot_Private 2ms 0.06% 67.54% 93ms 2.81% VecDuplicate 1ms 0.03% 67.57% 91ms 2.75% VecTDot 2ms 0.06% 67.63% 90ms 2.72% std::pow (inline) 16ms 0.48% 68.12% 88ms 2.66% __pow 0 0% 68.12% 84ms 2.54% boost::numeric::ublas::norm_inf (inline) 60ms 1.81% 69.93% 84ms 2.54% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 69.93% 84ms 2.54% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 69.93% 84ms 2.54% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 15ms 0.45% 70.39% 81ms 2.45% MPI_Wtime 0 0% 70.39% 80ms 2.42% VecTDot_Seq 0 0% 70.39% 80ms 2.42% VecXDot_Seq_Private.constprop.0 11ms 0.33% 70.72% 72ms 2.18% __ieee754_pow_fma 68ms 2.06% 72.78% 69ms 2.09% VecMDot_Seq 66ms 2.00% 74.77% 66ms 2.00% [[vdso]] 0 0% 74.77% 66ms 2.00% __GI___clock_gettime 13ms 0.39% 75.17% 64ms 1.94% PetscLogEventBeginDefault 19ms 0.57% 75.74% 62ms 1.88% PetscLogEventEndDefault 1ms 0.03% 75.77% 60ms 1.81% KSP_RemoveNullSpace (inline) 2ms 0.06% 75.83% 57ms 1.72% VecMAXPY 0 0% 75.83% 57ms 1.72% VecNorm 2ms 0.06% 75.89% 50ms 1.51% VecDuplicate_Seq 27ms 0.82% 76.71% 47ms 1.42% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 1ms 0.03% 76.74% 47ms 1.42% VecNorm_Seq 40ms 1.21% 77.95% 47ms 1.42% __ieee754_exp_fma 3ms 0.091% 78.04% 46ms 1.39% VecCreate 2ms 0.06% 78.10% 41ms 1.24% VecDestroy 0 0% 78.10% 41ms 1.24% VecDuplicate_MPI 8ms 0.24% 78.34% 40ms 1.21% PetscMallocA 37ms 1.12% 79.46% 37ms 1.12% exp_inline (inline) 0 0% 79.46% 36ms 1.09% CxxTest::RealWorldDescription::setUp 0 0% 79.46% 36ms 1.09% PetscInitialize 0 0% 79.46% 36ms 1.09% PetscSetup::setUpWorld 0 0% 79.46% 36ms 1.09% PetscSetupUtils::CommonSetup 0 0% 79.46% 36ms 1.09% PetscSetupUtils::InitialisePetsc 36ms 1.09% 80.55% 36ms 1.09% [libchaste_heart.so] 0 0% 80.55% 35ms 1.06% PMPI_Init_thread 0 0% 80.55% 35ms 1.06% ompi_mpi_init 5ms 0.15% 80.70% 34ms 1.03% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.70% 34ms 1.03% AbstractBidomainSolver::FinaliseLinearSystem 2ms 0.06% 80.76% 33ms 1% 4ms 0.12% 80.88% 32ms 0.97% PetscMallocAlign 29ms 0.88% 81.76% 30ms 0.91% VecMAXPY_Seq 2ms 0.06% 81.82% 28ms 0.85% VecCopy 25ms 0.76% 82.58% 25ms 0.76% DistributedVector::Iterator::operator!= 0 0% 82.58% 24ms 0.73% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 82.58% 24ms 0.73% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 82.58% 24ms 0.73% boost_numeric_ublas_abs (inline) 0 0% 82.58% 24ms 0.73% orte_init 24ms 0.73% 83.30% 24ms 0.73% std::abs (inline) 0 0% 83.30% 22ms 0.67% PetscHeaderCreate_Private 1ms 0.03% 83.33% 22ms 0.67% VecAXPY 0 0% 83.33% 22ms 0.67% VecNorm_MPI 0 0% 83.33% 22ms 0.67% VecNorm_MPI_Default.constprop.0 0 0% 83.33% 22ms 0.67% VecSetType 21ms 0.64% 83.97% 21ms 0.64% [libm.so.6] 21ms 0.64% 84.60% 21ms 0.64% log_inline (inline) 20ms 0.6% 85.21% 20ms 0.6% DistributedVector::Stripe::operator[] (inline) 0 0% 85.21% 20ms 0.6% VecCreate_MPI_Private 1ms 0.03% 85.24% 19ms 0.57% VecAYPX 1ms 0.03% 85.27% 19ms 0.57% VecCreate_Seq 6ms 0.18% 85.45% 18ms 0.54% AbstractCardiacCell::SetVoltage 2ms 0.06% 85.51% 18ms 0.54% PetscHeaderDestroy_Private 0 0% 85.51% 18ms 0.54% VecAXPY_Seq 6ms 0.18% 85.69% 18ms 0.54% __GI___libc_malloc 18ms 0.54% 86.24% 18ms 0.54% daxpy_ 0 0% 86.24% 17ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 6ms 0.18% 86.42% 17ms 0.51% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 2ms 0.06% 86.48% 17ms 0.51% __posix_memalign