File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 2919ms, 86.54% of 3373ms total Dropped 449 nodes (cum <= 16.86ms) flat flat% sum% cum cum% 0 0% 0% 3366ms 99.79% __libc_start_call_main 0 0% 0% 3366ms 99.79% __libc_start_main_impl 0 0% 0% 3366ms 99.79% _start 0 0% 0% 3364ms 99.73% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3364ms 99.73% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3364ms 99.73% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3364ms 99.73% main 0 0% 0% 3323ms 98.52% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3323ms 98.52% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3323ms 98.52% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.03% 0.03% 3319ms 98.40% AbstractCardiacProblem::Solve 0 0% 0.03% 3311ms 98.16% AbstractDynamicLinearPdeSolver::Solve 12ms 0.36% 0.39% 1617ms 47.94% AbstractCardiacTissue::SolveCellSystems 0 0% 0.39% 1200ms 35.58% LinearSystem::Solve 0 0% 0.39% 1120ms 33.20% KSPSolve 1ms 0.03% 0.42% 1120ms 33.20% KSPSolve_Private 0 0% 0.42% 1062ms 31.49% KSPSolve_SYMMLQ 26ms 0.77% 1.19% 888ms 26.33% AbstractCardiacCell::ComputeExceptVoltage 22ms 0.65% 1.84% 744ms 22.06% AbstractOneStepIvpOdeSolver::InternalSolve 58ms 1.72% 3.56% 637ms 18.89% EulerIvpOdeSolver::CalculateNextYValue 25ms 0.74% 4.30% 610ms 18.08% AbstractCardiacTissue::UpdateCaches (inline) 3ms 0.089% 4.39% 607ms 18.00% PCApply 0 0% 4.39% 601ms 17.82% PCApply_BJacobi_Singleblock 172ms 5.10% 9.49% 577ms 17.11% CellLuoRudy1991FromCellML::EvaluateYDerivatives 200ms 5.93% 15.42% 564ms 16.72% CellLuoRudy1991FromCellML::GetIIonic 260ms 7.71% 23.12% 527ms 15.62% __GI___exp 5ms 0.15% 23.27% 526ms 15.59% MatMult 0 0% 23.27% 521ms 15.45% KSP_PCApply.lto_priv.18 16ms 0.47% 23.75% 511ms 15.15% MatMult_SeqAIJ (partial-inline) 490ms 14.53% 38.27% 511ms 15.15% MatMult_SeqAIJ_Inode (inline) 0 0% 38.27% 496ms 14.71% KSPSolve_PREONLY (partial-inline) 1ms 0.03% 38.30% 472ms 13.99% MatSolve 0 0% 38.30% 472ms 13.99% PCApply_ICC 460ms 13.64% 51.94% 463ms 13.73% MatSolve_SeqSBAIJ_1_NaturalOrdering 71ms 2.10% 54.05% 421ms 12.48% BidomainSolver::SetupLinearSystem 217ms 6.43% 60.48% 259ms 7.68% __ieee754_exp_fma 0 0% 60.48% 196ms 5.81% std::pow (inline) 20ms 0.59% 61.07% 195ms 5.78% __pow 15ms 0.44% 61.52% 174ms 5.16% __ieee754_pow_fma 1ms 0.03% 61.55% 129ms 3.82% KSPConvergedDefault 0 0% 61.55% 126ms 3.74% KSP_PCApply (partial-inline) 0 0% 61.55% 90ms 2.67% MatNullSpaceRemove 0 0% 61.55% 83ms 2.46% VecDuplicate 83ms 2.46% 64.01% 83ms 2.46% log_inline (inline) 21ms 0.62% 64.63% 78ms 2.31% MPI_Wtime 34ms 1.01% 65.64% 74ms 2.19% CellLuoRudy1991FromCellML::VerifyStateVariables 70ms 2.08% 67.71% 72ms 2.13% exp_inline (inline) 18ms 0.53% 68.25% 67ms 1.99% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 68.25% 67ms 1.99% AbstractBidomainSolver::FinaliseLinearSystem 5ms 0.15% 68.40% 61ms 1.81% VecCopy 2ms 0.059% 68.46% 59ms 1.75% VecDuplicate_MPI 6ms 0.18% 68.63% 58ms 1.72% PetscLogEventBeginDefault 18ms 0.53% 69.17% 58ms 1.72% PetscLogEventEndDefault 1ms 0.03% 69.20% 57ms 1.69% __GI___clock_gettime 56ms 1.66% 70.86% 56ms 1.66% [[vdso]] 13ms 0.39% 71.24% 54ms 1.60% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 71.24% 51ms 1.51% VecMDot 3ms 0.089% 71.33% 51ms 1.51% VecMXDot_Private 3ms 0.089% 71.42% 47ms 1.39% VecNorm 42ms 1.25% 72.67% 42ms 1.25% __memcpy_avx512_unaligned_erms 41ms 1.22% 73.88% 41ms 1.22% [libchaste_heart.so] 39ms 1.16% 75.04% 39ms 1.16% DistributedVector::Iterator::operator!= 3ms 0.089% 75.13% 39ms 1.16% VecMAXPY 33ms 0.98% 76.10% 39ms 1.16% top12 (inline) 0 0% 76.10% 38ms 1.13% VecNorm_Seq 34ms 1.01% 77.11% 37ms 1.10% AbstractParameterisedSystem::SetAnyVariable 0 0% 77.11% 37ms 1.10% CxxTest::RealWorldDescription::setUp 0 0% 77.11% 37ms 1.10% PetscInitialize 0 0% 77.11% 37ms 1.10% PetscSetup::setUpWorld 0 0% 77.11% 37ms 1.10% PetscSetupUtils::CommonSetup 0 0% 77.11% 37ms 1.10% PetscSetupUtils::InitialisePetsc 0 0% 77.11% 36ms 1.07% PMPI_Init_thread 15ms 0.44% 77.56% 36ms 1.07% TimeStepper::TimeStepper 3ms 0.089% 77.65% 36ms 1.07% VecCreate 0 0% 77.65% 36ms 1.07% ompi_mpi_init 35ms 1.04% 78.68% 35ms 1.04% ddot_ 0 0% 78.68% 34ms 1.01% PetscMemcpy (inline) 3ms 0.089% 78.77% 32ms 0.95% 30ms 0.89% 79.66% 32ms 0.95% VecMDot_Seq 0 0% 79.66% 32ms 0.95% VecNorm_MPI 1ms 0.03% 79.69% 32ms 0.95% VecNorm_MPI_Default.constprop.0 2ms 0.059% 79.75% 31ms 0.92% VecCopy_Seq (partial-inline) 5ms 0.15% 79.90% 31ms 0.92% VecCreate_MPI_Private 6ms 0.18% 80.08% 29ms 0.86% PetscMallocA 22ms 0.65% 80.73% 26ms 0.77% AbstractOneStepIvpOdeSolver::Solve 21ms 0.62% 81.35% 25ms 0.74% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.03% 81.38% 25ms 0.74% VecDot 25ms 0.74% 82.12% 25ms 0.74% dasum_ 0 0% 82.12% 25ms 0.74% orte_init 24ms 0.71% 82.83% 24ms 0.71% DistributedVector::Stripe::operator[] (inline) 0 0% 82.83% 24ms 0.71% VecDot_Seq 0 0% 82.83% 24ms 0.71% VecDuplicate_Seq 0 0% 82.83% 24ms 0.71% VecXDot_Seq_Private.constprop.0 2ms 0.059% 82.89% 23ms 0.68% PetscMallocAlign (partial-inline) 2ms 0.059% 82.95% 23ms 0.68% VecAXPY 0 0% 82.95% 22ms 0.65% VecDestroy 8ms 0.24% 83.19% 21ms 0.62% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 21ms 0.62% 83.81% 21ms 0.62% __ieee754_log_fma 20ms 0.59% 84.41% 20ms 0.59% ReplicatableVector::operator[] 20ms 0.59% 85.00% 20ms 0.59% VecMAXPY_Seq 0 0% 85.00% 19ms 0.56% std::vector::_M_assign_aux (inline) 0 0% 85.00% 19ms 0.56% std::vector::assign (inline) 18ms 0.53% 85.53% 18ms 0.53% TimeStepper::CalculateNextTime 0 0% 85.53% 17ms 0.5% PetscMemzero (inline) 0 0% 85.53% 17ms 0.5% VecSet 0 0% 85.53% 17ms 0.5% VecStashCreate_Private 17ms 0.5% 86.04% 17ms 0.5% __memset_avx512_unaligned_erms 0 0% 86.04% 17ms 0.5% hwloc_topology_load 17ms 0.5% 86.54% 17ms 0.5% std::isinf (inline)