File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109592ms, 91.77% of 119422ms total Dropped 1104 nodes (cum <= 597.11ms) flat flat% sum% cum cum% 0 0% 0% 119410ms 100% __libc_start_call_main 0 0% 0% 119410ms 100% __libc_start_main_impl 0 0% 0% 119410ms 100% _start 0 0% 0% 119407ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119407ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119407ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119407ms 100% main 0 0% 0% 119376ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119376ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119376ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119376ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119376ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119376ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 118133ms 98.92% AbstractCardiacProblem::Solve 7ms 0.0059% 0.0092% 117371ms 98.28% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0059% 0.015% 65795ms 55.09% LinearSystem::Solve 0 0% 0.015% 65299ms 54.68% KSPSolve 13ms 0.011% 0.026% 65299ms 54.68% KSPSolve_Private 16ms 0.013% 0.039% 64917ms 54.36% KSPSolve_SYMMLQ 221ms 0.19% 0.22% 42683ms 35.74% AbstractCardiacTissue::SolveCellSystems 5ms 0.0042% 0.23% 36685ms 30.72% PCApply 4ms 0.0033% 0.23% 36673ms 30.71% PCApply_BJacobi_Singleblock 1ms 0.00084% 0.23% 34104ms 28.56% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.24% 33000ms 27.63% PCApply_ICC 8ms 0.0067% 0.24% 32997ms 27.63% MatSolve 32448ms 27.17% 27.41% 32989ms 27.62% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1421ms 1.19% 28.60% 32717ms 27.40% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 28.60% 31747ms 26.58% KSP_PCApply.lto_priv.18 6899ms 5.78% 34.38% 28158ms 23.58% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 5ms 0.0042% 34.39% 22237ms 18.62% MatMult 487ms 0.41% 34.79% 22232ms 18.62% MatMult_SeqAIJ (partial-inline) 21452ms 17.96% 52.76% 21967ms 18.39% MatMult_SeqAIJ_Inode (inline) 1973ms 1.65% 54.41% 14673ms 12.29% CardiacNewtonSolver::Solve 336ms 0.28% 54.69% 9099ms 7.62% AbstractCardiacTissue::UpdateCaches (inline) 4361ms 3.65% 58.34% 8628ms 7.22% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1980ms 1.66% 60.00% 8560ms 7.17% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1120ms 0.94% 60.94% 7944ms 6.65% BidomainSolver::SetupLinearSystem 1093ms 0.92% 61.85% 7174ms 6.01% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00084% 61.85% 6962ms 5.83% KSP_PCApply (partial-inline) 4ms 0.0033% 61.86% 6426ms 5.38% KSPConvergedDefault 5808ms 4.86% 66.72% 5808ms 4.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3927ms 3.29% 70.01% 3967ms 3.32% __ieee754_log_fma 0 0% 70.01% 3680ms 3.08% boost::numeric::ublas::norm_inf (inline) 2498ms 2.09% 72.10% 3680ms 3.08% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.10% 3680ms 3.08% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.10% 3680ms 3.08% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 9ms 0.0075% 72.11% 3375ms 2.83% MatNullSpaceRemove 3264ms 2.73% 74.84% 3264ms 2.73% __memcpy_avx_unaligned_erms 30ms 0.025% 74.87% 3249ms 2.72% std::pow (inline) 0 0% 74.87% 3218ms 2.69% PetscMemcpy (inline) 389ms 0.33% 75.19% 3210ms 2.69% __pow 1822ms 1.53% 76.72% 2968ms 2.49% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2825ms 2.37% 79.08% 2825ms 2.37% ddot_ 345ms 0.29% 79.37% 2813ms 2.36% __ieee754_pow_fma 20ms 0.017% 79.39% 2711ms 2.27% VecCopy 0 0% 79.39% 2688ms 2.25% VecCopy_Seq (partial-inline) 16ms 0.013% 79.40% 2408ms 2.02% VecAXPY 13ms 0.011% 79.41% 2392ms 2.00% VecAXPY_Seq 2370ms 1.98% 81.40% 2370ms 1.98% daxpy_ 6ms 0.005% 81.40% 2259ms 1.89% VecDot 0 0% 81.40% 2253ms 1.89% VecDot_Seq 1ms 0.00084% 81.40% 2253ms 1.89% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.41% 2212ms 1.85% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.41% 1924ms 1.61% VecMDot 16ms 0.013% 81.42% 1924ms 1.61% VecMXDot_Private 1903ms 1.59% 83.01% 1907ms 1.60% VecMDot_Seq 29ms 0.024% 83.04% 1804ms 1.51% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1614ms 1.35% 84.39% 1673ms 1.40% exp_inline (inline) 0 0% 84.39% 1558ms 1.30% AbstractFeAssemblerInterface::AssembleMatrix (inline) 8ms 0.0067% 84.39% 1442ms 1.21% VecMAXPY 1427ms 1.19% 85.59% 1434ms 1.20% VecMAXPY_Seq 1403ms 1.17% 86.76% 1403ms 1.17% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 7ms 0.0059% 86.77% 1181ms 0.99% boost::numeric::ublas::matrix_assign (inline) 245ms 0.21% 86.98% 1166ms 0.98% boost::numeric::ublas::indexing_matrix_assign 1157ms 0.97% 87.94% 1157ms 0.97% __memset_avx2_unaligned_erms 0 0% 87.94% 1149ms 0.96% PetscMemzero (inline) 0 0% 87.94% 1095ms 0.92% CuboidMeshConstructor::Construct 0 0% 87.94% 1094ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00084% 87.95% 1094ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 0 0% 87.95% 1082ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.95% 1082ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.95% 1082ms 0.91% boost_numeric_ublas_abs (inline) 1082ms 0.91% 88.85% 1082ms 0.91% std::abs (inline) 829ms 0.69% 89.55% 1072ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00084% 89.55% 983ms 0.82% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.55% 981ms 0.82% Element::Element 3ms 0.0025% 89.55% 973ms 0.81% VecDuplicate 3ms 0.0025% 89.55% 931ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 6ms 0.005% 89.56% 908ms 0.76% BidomainAssembler::ComputeMatrixTerm 5ms 0.0042% 89.56% 872ms 0.73% boost::numeric::ublas::c_matrix::c_matrix (inline) 8ms 0.0067% 89.57% 863ms 0.72% VecScale 4ms 0.0033% 89.57% 855ms 0.72% VecScale_Seq 849ms 0.71% 90.28% 849ms 0.71% dscal_ 834ms 0.7% 90.98% 834ms 0.7% [libchaste_heart.so] 6ms 0.005% 90.99% 825ms 0.69% PetscMallocA 0 0% 90.99% 820ms 0.69% VecNorm 5ms 0.0042% 90.99% 819ms 0.69% PetscMallocAlign (partial-inline) 1ms 0.00084% 90.99% 815ms 0.68% VecNorm_Seq 744ms 0.62% 91.61% 744ms 0.62% log_inline (inline) 1ms 0.00084% 91.62% 709ms 0.59% BidomainProblem::WriteOneStep 0 0% 91.62% 654ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 3ms 0.0025% 91.62% 650ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 180ms 0.15% 91.77% 644ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.77% 598ms 0.5% boost::numeric::ublas::matrix_slice::operator= (inline)