File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 107841ms, 91.83% of 117440ms total Dropped 1115 nodes (cum <= 587.20ms) flat flat% sum% cum cum% 0 0% 0% 117428ms 100% __libc_start_call_main 0 0% 0% 117428ms 100% __libc_start_main_impl 0 0% 0% 117428ms 100% _start 0 0% 0% 117425ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 117425ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 117425ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 117425ms 100% main 0 0% 0% 117392ms 100% AbstractConvergenceTester::Converge 0 0% 0% 117392ms 100% CxxTest::RealTestDescription::run 0 0% 0% 117392ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 117392ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 117392ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 117392ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 1ms 0.00085% 0.00085% 116141ms 98.89% AbstractCardiacProblem::Solve 6ms 0.0051% 0.006% 115410ms 98.27% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0043% 0.01% 63994ms 54.49% LinearSystem::Solve 1ms 0.00085% 0.011% 63529ms 54.09% KSPSolve 12ms 0.01% 0.021% 63529ms 54.09% KSPSolve_Private 10ms 0.0085% 0.03% 63145ms 53.77% KSPSolve_SYMMLQ 254ms 0.22% 0.25% 42704ms 36.36% AbstractCardiacTissue::SolveCellSystems 3ms 0.0026% 0.25% 35649ms 30.36% PCApply 6ms 0.0051% 0.25% 35640ms 30.35% PCApply_BJacobi_Singleblock 0 0% 0.25% 33406ms 28.45% KSPSolve_PREONLY (partial-inline) 1388ms 1.18% 1.44% 32916ms 28.03% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 1.44% 32281ms 27.49% PCApply_ICC 4ms 0.0034% 1.44% 32279ms 27.49% MatSolve 31758ms 27.04% 28.48% 32275ms 27.48% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 2ms 0.0017% 28.48% 30801ms 26.23% KSP_PCApply.lto_priv.18 7093ms 6.04% 34.52% 28507ms 24.27% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 14ms 0.012% 34.54% 21126ms 17.99% MatMult 224ms 0.19% 34.73% 21112ms 17.98% MatMult_SeqAIJ (partial-inline) 20628ms 17.56% 52.29% 21112ms 17.98% MatMult_SeqAIJ_Inode (inline) 2028ms 1.73% 54.02% 14700ms 12.52% CardiacNewtonSolver::Solve 432ms 0.37% 54.39% 8939ms 7.61% AbstractCardiacTissue::UpdateCaches (inline) 4265ms 3.63% 58.02% 8481ms 7.22% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1920ms 1.63% 59.65% 8309ms 7.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1153ms 0.98% 60.63% 7632ms 6.50% BidomainSolver::SetupLinearSystem 1126ms 0.96% 61.59% 7209ms 6.14% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.59% 6942ms 5.91% KSP_PCApply (partial-inline) 9ms 0.0077% 61.60% 6380ms 5.43% KSPConvergedDefault 5826ms 4.96% 66.56% 5826ms 4.96% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3931ms 3.35% 69.91% 3969ms 3.38% __ieee754_log_fma 0 0% 69.91% 3802ms 3.24% boost::numeric::ublas::norm_inf (inline) 2538ms 2.16% 72.07% 3802ms 3.24% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.07% 3802ms 3.24% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.07% 3802ms 3.24% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 2ms 0.0017% 72.07% 3341ms 2.84% MatNullSpaceRemove 26ms 0.022% 72.09% 3289ms 2.80% std::pow (inline) 3263ms 2.78% 74.87% 3263ms 2.78% __memcpy_avx_unaligned_erms 364ms 0.31% 75.18% 3259ms 2.78% __pow 0 0% 75.18% 3229ms 2.75% PetscMemcpy (inline) 2941ms 2.50% 77.69% 2941ms 2.50% ddot_ 385ms 0.33% 78.01% 2870ms 2.44% __ieee754_pow_fma 1786ms 1.52% 79.54% 2865ms 2.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 16ms 0.014% 79.55% 2738ms 2.33% VecCopy 6ms 0.0051% 79.55% 2719ms 2.32% VecCopy_Seq (partial-inline) 3ms 0.0026% 79.56% 2391ms 2.04% VecDot 0 0% 79.56% 2388ms 2.03% VecDot_Seq 1ms 0.00085% 79.56% 2388ms 2.03% VecXDot_Seq_Private.constprop.0 12ms 0.01% 79.57% 2372ms 2.02% VecAXPY 9ms 0.0077% 79.58% 2360ms 2.01% VecAXPY_Seq 2336ms 1.99% 81.56% 2336ms 1.99% daxpy_ 1ms 0.00085% 81.57% 2104ms 1.79% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00085% 81.57% 1830ms 1.56% VecMDot 7ms 0.006% 81.57% 1829ms 1.56% VecMXDot_Private 1815ms 1.55% 83.12% 1822ms 1.55% VecMDot_Seq 33ms 0.028% 83.15% 1740ms 1.48% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1577ms 1.34% 84.49% 1631ms 1.39% exp_inline (inline) 9ms 0.0077% 84.50% 1509ms 1.28% VecMAXPY 1495ms 1.27% 85.77% 1500ms 1.28% VecMAXPY_Seq 0 0% 85.77% 1435ms 1.22% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1294ms 1.10% 86.87% 1294ms 1.10% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.87% 1166ms 0.99% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.87% 1166ms 0.99% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.87% 1166ms 0.99% boost_numeric_ublas_abs (inline) 1166ms 0.99% 87.86% 1166ms 0.99% std::abs (inline) 6ms 0.0051% 87.87% 1126ms 0.96% boost::numeric::ublas::matrix_assign (inline) 207ms 0.18% 88.04% 1112ms 0.95% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.04% 1107ms 0.94% CuboidMeshConstructor::Construct 0 0% 88.04% 1106ms 0.94% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00085% 88.05% 1106ms 0.94% DistributedTetrahedralMesh::ConstructCuboid 812ms 0.69% 88.74% 1050ms 0.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.0034% 88.74% 1000ms 0.85% Element::Element 3ms 0.0026% 88.74% 969ms 0.83% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00085% 88.74% 925ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 925ms 0.79% 89.53% 925ms 0.79% __memset_avx2_unaligned_erms 0 0% 89.53% 913ms 0.78% PetscMemzero (inline) 3ms 0.0026% 89.53% 897ms 0.76% boost::numeric::ublas::c_matrix::c_matrix (inline) 4ms 0.0034% 89.54% 880ms 0.75% BidomainAssembler::ComputeMatrixTerm 9ms 0.0077% 89.55% 869ms 0.74% VecScale 6ms 0.0051% 89.55% 860ms 0.73% VecScale_Seq 850ms 0.72% 90.27% 850ms 0.72% dscal_ 814ms 0.69% 90.97% 814ms 0.69% log_inline (inline) 807ms 0.69% 91.65% 807ms 0.69% [libchaste_heart.so] 1ms 0.00085% 91.66% 786ms 0.67% VecNorm 1ms 0.00085% 91.66% 780ms 0.66% VecDuplicate 0 0% 91.66% 780ms 0.66% VecNorm_Seq 0 0% 91.66% 760ms 0.65% AbstractBidomainSolver::FinaliseLinearSystem 187ms 0.16% 91.82% 758ms 0.65% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.82% 678ms 0.58% BidomainProblem::WriteOneStep 0 0% 91.82% 669ms 0.57% AbstractFeAssemblerInterface::Assemble (inline) 7ms 0.006% 91.82% 648ms 0.55% PetscMallocA 6ms 0.0051% 91.83% 641ms 0.55% PetscMallocAlign (partial-inline)