File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 299ms, 91.72% of 326ms total Dropped 152 nodes (cum <= 1.63ms) flat flat% sum% cum cum% 0 0% 0% 320ms 98.16% __libc_start_call_main 0 0% 0% 320ms 98.16% __libc_start_main_impl 0 0% 0% 320ms 98.16% _start 0 0% 0% 318ms 97.55% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 318ms 97.55% CxxTest::TestRunner::runAllTests 0 0% 0% 318ms 97.55% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 318ms 97.55% main 0 0% 0% 284ms 87.12% CxxTest::RealTestDescription::run 0 0% 0% 284ms 87.12% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 284ms 87.12% CxxTest::TestRunner::runTest (inline) 0 0% 0% 284ms 87.12% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 284ms 87.12% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 280ms 85.89% AbstractCardiacProblem::Solve 0 0% 0% 280ms 85.89% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 248ms 76.07% KSPSolve 0 0% 0% 248ms 76.07% KSPSolve_Private 0 0% 0% 248ms 76.07% LinearSystem::Solve 0 0% 0% 246ms 75.46% KSPSolve_CG 0 0% 0% 150ms 46.01% KSP_PCApply.lto_priv.7 0 0% 0% 142ms 43.56% PCApply 0 0% 0% 142ms 43.56% PCApply_BJacobi_Singleblock 0 0% 0% 125ms 38.34% KSPSolve_PREONLY (partial-inline) 0 0% 0% 121ms 37.12% MatSolve 120ms 36.81% 36.81% 121ms 37.12% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 36.81% 121ms 37.12% PCApply_ICC 0 0% 36.81% 56ms 17.18% MatMult 1ms 0.31% 37.12% 56ms 17.18% MatMult_SeqAIJ (partial-inline) 55ms 16.87% 53.99% 56ms 17.18% MatMult_SeqAIJ_Inode (inline) 0 0% 53.99% 32ms 9.82% CxxTest::RealWorldDescription::setUp 0 0% 53.99% 32ms 9.82% PMPI_Init_thread 0 0% 53.99% 32ms 9.82% PetscInitialize 0 0% 53.99% 32ms 9.82% PetscSetup::setUpWorld 0 0% 53.99% 32ms 9.82% PetscSetupUtils::CommonSetup 0 0% 53.99% 32ms 9.82% PetscSetupUtils::InitialisePetsc 0 0% 53.99% 32ms 9.82% ompi_mpi_init 0 0% 53.99% 27ms 8.28% 0 0% 53.99% 26ms 7.98% AbstractCardiacTissue::SolveCellSystems 22ms 6.75% 60.74% 22ms 6.75% ddot_ 0 0% 60.74% 20ms 6.13% orte_init 1ms 0.31% 61.04% 19ms 5.83% MatNullSpaceRemove 0 0% 61.04% 18ms 5.52% AbstractCardiacCell::ComputeExceptVoltage 0 0% 61.04% 17ms 5.21% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.61% 61.66% 15ms 4.60% EulerIvpOdeSolver::CalculateNextYValue 0 0% 61.66% 13ms 3.99% VecTDot 0 0% 61.66% 13ms 3.99% VecTDot_Seq 0 0% 61.66% 13ms 3.99% VecXDot_Seq_Private.constprop.0 0 0% 61.66% 13ms 3.99% __GI__dl_catch_exception 0 0% 61.66% 13ms 3.99% _dl_catch_error 0 0% 61.66% 13ms 3.99% _dlerror_run 0 0% 61.66% 13ms 3.99% mca_base_framework_components_register 0 0% 61.66% 13ms 3.99% mca_base_framework_open 0 0% 61.66% 13ms 3.99% mca_base_framework_register 0 0% 61.66% 12ms 3.68% VecMDot 1ms 0.31% 61.96% 12ms 3.68% VecMXDot_Private 0 0% 61.96% 12ms 3.68% _dl_init 0 0% 61.96% 12ms 3.68% call_init (inline) 0 0% 61.96% 12ms 3.68% hwloc_topology_load 0 0% 61.96% 12ms 3.68% opal_stackframe_output 0 0% 61.96% 11ms 3.37% CellLuoRudy1991FromCellML::EvaluateYDerivatives 11ms 3.37% 65.34% 11ms 3.37% VecMDot_Seq 6ms 1.84% 67.18% 11ms 3.37% __GI___exp 0 0% 67.18% 11ms 3.37% ___dlopen 0 0% 67.18% 11ms 3.37% _dl_open 0 0% 67.18% 11ms 3.37% dl_open_worker 0 0% 67.18% 11ms 3.37% dlopen_doit 0 0% 67.18% 11ms 3.37% dlopen_implementation (inline) 0 0% 67.18% 11ms 3.37% hwloc_linux_get_tid_last_cpu_location 0 0% 67.18% 10ms 3.07% VecAYPX 10ms 3.07% 70.25% 10ms 3.07% VecAYPX_Seq 0 0% 70.25% 10ms 3.07% mca_base_component_find 0 0% 70.25% 10ms 3.07% mca_base_component_repository_open 0 0% 70.25% 9ms 2.76% VecNorm 0 0% 70.25% 9ms 2.76% VecNorm_Seq 0 0% 70.25% 7ms 2.15% AbstractCardiacTissue::UpdateCaches (inline) 3ms 0.92% 71.17% 7ms 2.15% CellLuoRudy1991FromCellML::GetIIonic 0 0% 71.17% 6ms 1.84% KSP_PCApply (partial-inline) 0 0% 71.17% 6ms 1.84% VecAXPY 0 0% 71.17% 6ms 1.84% VecAXPY_Seq 0 0% 71.17% 6ms 1.84% VecMAXPY 6ms 1.84% 73.01% 6ms 1.84% VecMAXPY_Seq 0 0% 73.01% 6ms 1.84% _dl_start_user 0 0% 73.01% 6ms 1.84% mca_base_framework_components_open 0 0% 73.01% 6ms 1.84% mca_topo_base_dist_graph_neighbors_count 0 0% 73.01% 5ms 1.53% PetscMallocA 0 0% 73.01% 5ms 1.53% PetscMallocAlign (partial-inline) 0 0% 73.01% 5ms 1.53% VecDuplicate 0 0% 73.01% 5ms 1.53% VecDuplicate_Seq 5ms 1.53% 74.54% 5ms 1.53% __GI___clock_nanosleep 5ms 1.53% 76.07% 5ms 1.53% __GI___libc_read 0 0% 76.07% 5ms 1.53% __GI___nanosleep 5ms 1.53% 77.61% 5ms 1.53% __ieee754_exp_fma 1ms 0.31% 77.91% 5ms 1.53% _dl_map_object 1ms 0.31% 78.22% 5ms 1.53% _dl_runtime_resolve_xsavec 0 0% 78.22% 5ms 1.53% boost::serialization::singleton::get_instance 5ms 1.53% 79.75% 5ms 1.53% daxpy_ 0 0% 79.75% 5ms 1.53% dl_open_worker_begin 0 0% 79.75% 5ms 1.53% opal_hwloc_base_get_topology 0 0% 79.75% 5ms 1.53% orte_ess_base_proc_binding 0 0% 79.75% 5ms 1.53% usleep 0 0% 79.75% 4ms 1.23% BidomainSolver::SetupLinearSystem 0 0% 79.75% 4ms 1.23% VecCreate_Seq 0 0% 79.75% 4ms 1.23% VecSetType 4ms 1.23% 80.98% 4ms 1.23% __strlen_evex 2ms 0.61% 81.60% 4ms 1.23% _dl_fixup 0 0% 81.60% 4ms 1.23% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 81.60% 3ms 0.92% AbstractCardiacProblem::Initialise 0 0% 81.60% 3ms 0.92% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 81.60% 3ms 0.92% KSPConvergedDefault 0 0% 81.60% 3ms 0.92% PetscMemcpy (inline) 0 0% 81.60% 3ms 0.92% VecDestroy 1ms 0.31% 81.90% 3ms 0.92% __GI___libc_malloc 1ms 0.31% 82.21% 3ms 0.92% __cxa_finalize 0 0% 82.21% 3ms 0.92% __ieee754_pow_fma 3ms 0.92% 83.13% 3ms 0.92% __memcpy_avx512_unaligned_erms 0 0% 83.13% 3ms 0.92% __posix_memalign 0 0% 83.13% 3ms 0.92% __pow 3ms 0.92% 84.05% 3ms 0.92% __strcmp_evex 0 0% 84.05% 3ms 0.92% _dl_call_fini 3ms 0.92% 84.97% 3ms 0.92% _int_malloc 0 0% 84.97% 3ms 0.92% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 0 0% 84.97% 3ms 0.92% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 84.97% 3ms 0.92% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 84.97% 3ms 0.92% mca_base_component_var_register 0 0% 84.97% 3ms 0.92% mca_base_var_group_register 0 0% 84.97% 3ms 0.92% mca_base_var_register 0 0% 84.97% 3ms 0.92% std::pow (inline) 0 0% 84.97% 2ms 0.61% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.31% 85.28% 2ms 0.61% PetscCommDestroy 0 0% 85.28% 2ms 0.61% PetscHeaderDestroy_Private 1ms 0.31% 85.58% 2ms 0.61% PetscLayoutDestroy 0 0% 85.58% 2ms 0.61% PetscMemzero (inline) 1ms 0.31% 85.89% 2ms 0.61% TimeStepper::TimeStepper 0 0% 85.89% 2ms 0.61% VecCopy 0 0% 85.89% 2ms 0.61% VecCopy_Seq (partial-inline) 1ms 0.31% 86.20% 2ms 0.61% VecSet 0 0% 86.20% 2ms 0.61% XOpenDisplay 0 0% 86.20% 2ms 0.61% [hwloc_gl.so] 0 0% 86.20% 2ms 0.61% [hwloc_pci.so] 2ms 0.61% 86.81% 2ms 0.61% [libchaste_heart.so] 0 0% 86.81% 2ms 0.61% [libpciaccess.so.0.11.1] 0 0% 86.81% 2ms 0.61% [libxcb.so.1.1.0] 0 0% 86.81% 2ms 0.61% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 86.81% 2ms 0.61% _XConnectXCB 2ms 0.61% 87.42% 2ms 0.61% __GI___libc_write 2ms 0.61% 88.04% 2ms 0.61% __GI___open64_nocancel 0 0% 88.04% 2ms 0.61% __GI_exit 0 0% 88.04% 2ms 0.61% __dlclose 2ms 0.61% 88.65% 2ms 0.61% __memset_avx512_unaligned_erms 0 0% 88.65% 2ms 0.61% __run_exit_handlers 2ms 0.61% 89.26% 2ms 0.61% __strchr_evex 0 0% 89.26% 2ms 0.61% _dl_close 0 0% 89.26% 2ms 0.61% _dl_close_worker (inline) 0 0% 89.26% 2ms 0.61% _dl_fini 0 0% 89.26% 2ms 0.61% _dl_lookup_symbol_x 0 0% 89.26% 2ms 0.61% _dl_map_object_deps 0 0% 89.26% 2ms 0.61% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 2ms 0.61% 89.88% 2ms 0.61% log_inline (inline) 0 0% 89.88% 2ms 0.61% mca_base_component_repository_release 2ms 0.61% 90.49% 2ms 0.61% non-virtual thunk to CellLuoRudy1991FromCellML::EvaluateYDerivatives(double, std::vector const&, std::vector&) 0 0% 90.49% 2ms 0.61% opal_timer_base_get_freq 0 0% 90.49% 2ms 0.61% openaux 0 0% 90.49% 2ms 0.61% pci_get_strings 2ms 0.61% 91.10% 2ms 0.61% std::_Rb_tree_increment 2ms 0.61% 91.72% 2ms 0.61% strcmp 0 0% 91.72% 2ms 0.61% xcb_connect_to_display_with_auth_info