File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3350ms, 89.81% of 3730ms total Dropped 410 nodes (cum <= 18.65ms) flat flat% sum% cum cum% 1ms 0.027% 0.027% 3724ms 99.84% _start 0 0% 0.027% 3723ms 99.81% __libc_start_call_main 0 0% 0.027% 3723ms 99.81% __libc_start_main_impl 0 0% 0.027% 3721ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0.027% 3721ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0.027% 3721ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0.027% 3721ms 99.76% main 0 0% 0.027% 3690ms 98.93% CxxTest::TestRunner::runSuite (inline) 0 0% 0.027% 3690ms 98.93% CxxTest::TestRunner::runTest (inline) 0 0% 0.027% 3690ms 98.93% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0.027% 3683ms 98.74% AbstractCardiacProblem::Solve 0 0% 0.027% 3676ms 98.55% AbstractDynamicLinearPdeSolver::Solve 12ms 0.32% 0.35% 1896ms 50.83% AbstractCardiacTissue::SolveCellSystems 0 0% 0.35% 1338ms 35.87% LinearSystem::Solve 1ms 0.027% 0.38% 1300ms 34.85% KSPSolve 1ms 0.027% 0.4% 1300ms 34.85% KSPSolve_Private 0 0% 0.4% 1260ms 33.78% KSPSolve_SYMMLQ 22ms 0.59% 0.99% 1057ms 28.34% AbstractCardiacCell::ComputeExceptVoltage 19ms 0.51% 1.50% 933ms 25.01% AbstractOneStepIvpOdeSolver::InternalSolve 87ms 2.33% 3.83% 785ms 21.05% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.08% 3.91% 738ms 19.79% PCApply 1ms 0.027% 3.94% 733ms 19.65% PCApply_BJacobi_Singleblock 215ms 5.76% 9.71% 690ms 18.50% CellLuoRudy1991FromCellML::EvaluateYDerivatives 21ms 0.56% 10.27% 673ms 18.04% AbstractCardiacTissue::UpdateCaches (inline) 2ms 0.054% 10.32% 656ms 17.59% MatMult 6ms 0.16% 10.48% 648ms 17.37% MatMult_SeqAIJ 641ms 17.18% 27.67% 645ms 17.29% MatMult_SeqAIJ_Inode (inline) 1ms 0.027% 27.69% 641ms 17.18% KSPSolve_PREONLY (partial-inline) 284ms 7.61% 35.31% 636ms 17.05% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.027% 35.34% 604ms 16.19% MatSolve 0 0% 35.34% 604ms 16.19% PCApply_ICC 597ms 16.01% 51.34% 599ms 16.06% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 51.34% 551ms 14.77% KSP_PCApply.lto_priv.18 174ms 4.66% 56.01% 538ms 14.42% __GI___exp 29ms 0.78% 56.78% 404ms 10.83% BidomainSolver::SetupLinearSystem 324ms 8.69% 65.47% 325ms 8.71% __ieee754_exp_fma 0 0% 65.47% 249ms 6.68% KSPConvergedDefault 0 0% 65.47% 234ms 6.27% KSP_PCApply (partial-inline) 1ms 0.027% 65.50% 192ms 5.15% std::pow (inline) 9ms 0.24% 65.74% 189ms 5.07% __pow 11ms 0.29% 66.03% 178ms 4.77% __ieee754_pow_fma 128ms 3.43% 69.46% 128ms 3.43% [libchaste_heart.so] 73ms 1.96% 71.42% 120ms 3.22% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 71.42% 87ms 2.33% MatNullSpaceRemove 84ms 2.25% 73.67% 84ms 2.25% log_inline (inline) 71ms 1.90% 75.58% 79ms 2.12% exp_inline (inline) 2ms 0.054% 75.63% 76ms 2.04% VecDuplicate 22ms 0.59% 76.22% 70ms 1.88% MPI_Wtime 20ms 0.54% 76.76% 70ms 1.88% TimeStepper::TimeStepper 63ms 1.69% 78.45% 63ms 1.69% TimeStepper::CalculateNextTime 0 0% 78.45% 59ms 1.58% VecMDot 2ms 0.054% 78.50% 59ms 1.58% VecMXDot_Private 6ms 0.16% 78.66% 51ms 1.37% VecDuplicate_MPI 48ms 1.29% 79.95% 48ms 1.29% [[vdso]] 0 0% 79.95% 48ms 1.29% __GI___clock_gettime 7ms 0.19% 80.13% 46ms 1.23% PetscLogEventEndDefault 43ms 1.15% 81.29% 43ms 1.15% [libm.so.6] 6ms 0.16% 81.45% 41ms 1.10% PetscLogEventBeginDefault 4ms 0.11% 81.55% 41ms 1.10% VecAXPY 41ms 1.10% 82.65% 41ms 1.10% VecMDot_Seq 6ms 0.16% 82.82% 39ms 1.05% VecCopy 4ms 0.11% 82.92% 39ms 1.05% VecDestroy 39ms 1.05% 83.97% 39ms 1.05% ddot_ 22ms 0.59% 84.56% 35ms 0.94% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 84.56% 33ms 0.88% VecCreate 6ms 0.16% 84.72% 32ms 0.86% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 84.72% 32ms 0.86% AbstractBidomainSolver::FinaliseLinearSystem 9ms 0.24% 84.96% 30ms 0.8% TimeStepper::AdvanceOneTimeStep 3ms 0.08% 85.04% 29ms 0.78% PetscMallocA 2ms 0.054% 85.09% 29ms 0.78% VecNorm 8ms 0.21% 85.31% 28ms 0.75% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 85.31% 28ms 0.75% CxxTest::RealWorldDescription::setUp 0 0% 85.31% 28ms 0.75% PMPI_Init_thread 0 0% 85.31% 28ms 0.75% PetscInitialize 0 0% 85.31% 28ms 0.75% PetscSetup::setUpWorld 0 0% 85.31% 28ms 0.75% PetscSetupUtils::CommonSetup 0 0% 85.31% 28ms 0.75% PetscSetupUtils::InitialisePetsc 0 0% 85.31% 28ms 0.75% VecDot 1ms 0.027% 85.34% 28ms 0.75% VecMAXPY 0 0% 85.34% 28ms 0.75% ompi_mpi_init 1ms 0.027% 85.36% 27ms 0.72% KSP_RemoveNullSpace (inline) 1ms 0.027% 85.39% 26ms 0.7% PetscMallocAlign 2ms 0.054% 85.44% 25ms 0.67% 0 0% 85.44% 25ms 0.67% VecDot_Seq 0 0% 85.44% 25ms 0.67% VecXDot_Seq_Private.constprop.0 0 0% 85.44% 24ms 0.64% VecAXPY_Seq 24ms 0.64% 86.09% 24ms 0.64% [libchaste_ode.so] 24ms 0.64% 86.73% 24ms 0.64% daxpy_ 19ms 0.51% 87.24% 23ms 0.62% AbstractOneStepIvpOdeSolver::Solve 1ms 0.027% 87.27% 23ms 0.62% VecCreate_MPI_Private 0 0% 87.27% 23ms 0.62% VecDuplicate_Seq 9ms 0.24% 87.51% 23ms 0.62% std::__cxx11::basic_string::basic_string 4ms 0.11% 87.61% 22ms 0.59% PetscFreeAlign 14ms 0.38% 87.99% 21ms 0.56% AbstractParameterisedSystem::GetAnyVariable 1ms 0.027% 88.02% 21ms 0.56% VecNorm_Seq 21ms 0.56% 88.58% 21ms 0.56% __ieee754_log_fma 21ms 0.56% 89.14% 21ms 0.56% __memcpy_avx512_unaligned_erms 3ms 0.08% 89.22% 20ms 0.54% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 2ms 0.054% 89.28% 20ms 0.54% PMPI_Comm_get_attr 0 0% 89.28% 20ms 0.54% PetscMemcpy (inline) 3ms 0.08% 89.36% 20ms 0.54% __GI___libc_free 17ms 0.46% 89.81% 19ms 0.51% VecMAXPY_Seq