File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 112103ms, 91.75% of 122189ms total Dropped 1166 nodes (cum <= 610.95ms) flat flat% sum% cum cum% 0 0% 0% 122174ms 100% __libc_start_call_main 0 0% 0% 122174ms 100% __libc_start_main_impl 0 0% 0% 122174ms 100% _start 0 0% 0% 122172ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 122172ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 122172ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 122172ms 100% main 0 0% 0% 122135ms 100% AbstractConvergenceTester::Converge 0 0% 0% 122135ms 100% CxxTest::RealTestDescription::run 0 0% 0% 122135ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 122135ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 122135ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 122135ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0016% 0.0016% 120879ms 98.93% AbstractCardiacProblem::Solve 6ms 0.0049% 0.0065% 119963ms 98.18% AbstractDynamicLinearPdeSolver::Solve 3ms 0.0025% 0.009% 68172ms 55.79% LinearSystem::Solve 1ms 0.00082% 0.0098% 67634ms 55.35% KSPSolve 11ms 0.009% 0.019% 67633ms 55.35% KSPSolve_Private 9ms 0.0074% 0.026% 67180ms 54.98% KSPSolve_SYMMLQ 214ms 0.18% 0.2% 42620ms 34.88% AbstractCardiacTissue::SolveCellSystems 1ms 0.00082% 0.2% 37027ms 30.30% PCApply 5ms 0.0041% 0.21% 37019ms 30.30% PCApply_BJacobi_Singleblock 1ms 0.00082% 0.21% 34235ms 28.02% KSPSolve_PREONLY (partial-inline) 4ms 0.0033% 0.21% 33149ms 27.13% MatSolve 0 0% 0.21% 33149ms 27.13% PCApply_ICC 32636ms 26.71% 26.92% 33145ms 27.13% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1504ms 1.23% 28.15% 32653ms 26.72% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0016% 28.15% 31976ms 26.17% KSP_PCApply.lto_priv.18 6827ms 5.59% 33.74% 28123ms 23.02% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 9ms 0.0074% 33.75% 24036ms 19.67% MatMult 5ms 0.0041% 33.75% 24027ms 19.66% MatMult_SeqAIJ 23543ms 19.27% 53.02% 24027ms 19.66% MatMult_SeqAIJ_Inode (inline) 1904ms 1.56% 54.58% 14594ms 11.94% CardiacNewtonSolver::Solve 332ms 0.27% 54.85% 9094ms 7.44% AbstractCardiacTissue::UpdateCaches (inline) 2082ms 1.70% 56.55% 8590ms 7.03% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4439ms 3.63% 60.19% 8553ms 7.00% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1088ms 0.89% 61.08% 8192ms 6.70% BidomainSolver::SetupLinearSystem 1061ms 0.87% 61.94% 7320ms 5.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.94% 7009ms 5.74% KSP_PCApply (partial-inline) 4ms 0.0033% 61.95% 6433ms 5.26% KSPConvergedDefault 5957ms 4.88% 66.82% 5957ms 4.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3798ms 3.11% 69.93% 3835ms 3.14% __ieee754_log_fma 0 0% 69.93% 3722ms 3.05% boost::numeric::ublas::norm_inf (inline) 2576ms 2.11% 72.04% 3722ms 3.05% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.04% 3722ms 3.05% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.04% 3722ms 3.05% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 9ms 0.0074% 72.05% 3425ms 2.80% MatNullSpaceRemove 3393ms 2.78% 74.82% 3393ms 2.78% __memcpy_avx_unaligned_erms 0 0% 74.82% 3357ms 2.75% PetscMemcpy (inline) 19ms 0.016% 74.84% 3155ms 2.58% std::pow (inline) 403ms 0.33% 75.17% 3131ms 2.56% __pow 2947ms 2.41% 77.58% 2947ms 2.41% ddot_ 20ms 0.016% 77.60% 2887ms 2.36% VecCopy 1ms 0.00082% 77.60% 2864ms 2.34% VecCopy_Seq (partial-inline) 1714ms 1.40% 79.00% 2840ms 2.32% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 6ms 0.0049% 79.01% 2739ms 2.24% VecAXPY 4ms 0.0033% 79.01% 2733ms 2.24% VecAXPY_Seq 393ms 0.32% 79.33% 2723ms 2.23% __ieee754_pow_fma 2708ms 2.22% 81.55% 2708ms 2.22% daxpy_ 1ms 0.00082% 81.55% 2385ms 1.95% VecDot 2ms 0.0016% 81.55% 2384ms 1.95% VecDot_Seq 1ms 0.00082% 81.55% 2382ms 1.95% VecXDot_Seq_Private.constprop.0 3ms 0.0025% 81.55% 2080ms 1.70% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0016% 81.55% 1922ms 1.57% VecMDot 13ms 0.011% 81.56% 1920ms 1.57% VecMXDot_Private 1893ms 1.55% 83.11% 1902ms 1.56% VecMDot_Seq 25ms 0.02% 83.13% 1709ms 1.40% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1566ms 1.28% 84.42% 1632ms 1.34% exp_inline (inline) 7ms 0.0057% 84.42% 1494ms 1.22% VecMAXPY 1479ms 1.21% 85.63% 1487ms 1.22% VecMAXPY_Seq 0 0% 85.63% 1433ms 1.17% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1430ms 1.17% 86.80% 1430ms 1.17% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1227ms 1.00% 87.81% 1227ms 1.00% __memset_avx2_unaligned_erms 0 0% 87.81% 1219ms 1% PetscMemzero (inline) 5ms 0.0041% 87.81% 1128ms 0.92% boost::numeric::ublas::matrix_assign (inline) 235ms 0.19% 88.00% 1114ms 0.91% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.00% 1096ms 0.9% AbstractTetrahedralMesh::ConstructRegularSlabMesh 826ms 0.68% 88.68% 1096ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.68% 1096ms 0.9% CuboidMeshConstructor::Construct 3ms 0.0025% 88.68% 1096ms 0.9% DistributedTetrahedralMesh::ConstructCuboid 0 0% 88.68% 1060ms 0.87% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.68% 1060ms 0.87% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.68% 1060ms 0.87% boost_numeric_ublas_abs (inline) 1060ms 0.87% 89.55% 1060ms 0.87% std::abs (inline) 3ms 0.0025% 89.55% 996ms 0.82% Element::Element 5ms 0.0041% 89.56% 981ms 0.8% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0025% 89.56% 980ms 0.8% VecDuplicate 2ms 0.0016% 89.56% 932ms 0.76% AbstractTetrahedralElement::AbstractTetrahedralElement 5ms 0.0041% 89.56% 926ms 0.76% VecScale 2ms 0.0016% 89.57% 921ms 0.75% VecScale_Seq 915ms 0.75% 90.31% 915ms 0.75% dscal_ 5ms 0.0041% 90.32% 874ms 0.72% BidomainAssembler::ComputeMatrixTerm 4ms 0.0033% 90.32% 872ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 1ms 0.00082% 90.32% 866ms 0.71% BidomainProblem::WriteOneStep 16ms 0.013% 90.34% 842ms 0.69% PetscMallocA 3ms 0.0025% 90.34% 835ms 0.68% VecNorm 0 0% 90.34% 828ms 0.68% VecNorm_Seq 827ms 0.68% 91.01% 827ms 0.68% [libchaste_heart.so] 4ms 0.0033% 91.02% 826ms 0.68% PetscMallocAlign (partial-inline) 0 0% 91.02% 657ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 234ms 0.19% 91.21% 654ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition 652ms 0.53% 91.74% 652ms 0.53% log_inline (inline) 0 0% 91.74% 647ms 0.53% AbstractFeAssemblerInterface::Assemble (inline) 3ms 0.0025% 91.75% 637ms 0.52% H5Dwrite