File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 117527ms, 91.39% of 128597ms total Dropped 1226 nodes (cum <= 642.99ms) flat flat% sum% cum cum% 0 0% 0% 128582ms 100% __libc_start_call_main 0 0% 0% 128582ms 100% __libc_start_main_impl 0 0% 0% 128582ms 100% _start 0 0% 0% 128578ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 128578ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 128578ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 128578ms 100% main 0 0% 0% 128533ms 100% AbstractConvergenceTester::Converge 0 0% 0% 128533ms 100% CxxTest::RealTestDescription::run 0 0% 0% 128533ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 128533ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 128533ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 128533ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0016% 0.0016% 127327ms 99.01% AbstractCardiacProblem::Solve 11ms 0.0086% 0.01% 126537ms 98.40% AbstractDynamicLinearPdeSolver::Solve 3ms 0.0023% 0.012% 69640ms 54.15% LinearSystem::Solve 5ms 0.0039% 0.016% 69056ms 53.70% KSPSolve 10ms 0.0078% 0.024% 69051ms 53.70% KSPSolve_Private 19ms 0.015% 0.039% 68686ms 53.41% KSPSolve_SYMMLQ 530ms 0.41% 0.45% 47550ms 36.98% AbstractCardiacTissue::SolveCellSystems 4ms 0.0031% 0.45% 40060ms 31.15% PCApply 6ms 0.0047% 0.46% 40043ms 31.14% PCApply_BJacobi_Singleblock 5ms 0.0039% 0.46% 37756ms 29.36% KSPSolve_PREONLY (partial-inline) 1061ms 0.83% 1.29% 36957ms 28.74% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0031% 1.29% 36632ms 28.49% PCApply_ICC 4ms 0.0031% 1.29% 36628ms 28.48% MatSolve 36244ms 28.18% 29.48% 36624ms 28.48% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 5ms 0.0039% 29.48% 34321ms 26.69% KSP_PCApply.lto_priv.18 7684ms 5.98% 35.46% 32598ms 25.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 11ms 0.0086% 35.47% 22981ms 17.87% MatMult 324ms 0.25% 35.72% 22970ms 17.86% MatMult_SeqAIJ (partial-inline) 22437ms 17.45% 53.17% 22965ms 17.86% MatMult_SeqAIJ_Inode (inline) 2250ms 1.75% 54.91% 16787ms 13.05% CardiacNewtonSolver::Solve 5615ms 4.37% 59.28% 10075ms 7.83% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1537ms 1.20% 60.48% 9744ms 7.58% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 235ms 0.18% 60.66% 9093ms 7.07% AbstractCardiacTissue::UpdateCaches (inline) 1729ms 1.34% 62.00% 8492ms 6.60% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1149ms 0.89% 62.90% 8085ms 6.29% BidomainSolver::SetupLinearSystem 7910ms 6.15% 69.05% 7910ms 6.15% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3ms 0.0023% 69.05% 7650ms 5.95% KSP_PCApply (partial-inline) 10ms 0.0078% 69.06% 7109ms 5.53% KSPConvergedDefault 4174ms 3.25% 72.30% 4272ms 3.32% __ieee754_log_fma 0 0% 72.30% 4068ms 3.16% boost::numeric::ublas::norm_inf (inline) 2781ms 2.16% 74.47% 4068ms 3.16% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 74.47% 4068ms 3.16% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 74.47% 4068ms 3.16% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3309ms 2.57% 77.04% 3309ms 2.57% ddot_ 6ms 0.0047% 77.04% 3268ms 2.54% MatNullSpaceRemove 33ms 0.026% 77.07% 3232ms 2.51% std::pow (inline) 408ms 0.32% 77.39% 3182ms 2.47% __pow 2009ms 1.56% 78.95% 3118ms 2.42% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 8ms 0.0062% 78.96% 2808ms 2.18% VecDot 0 0% 78.96% 2800ms 2.18% VecDot_Seq 1ms 0.00078% 78.96% 2800ms 2.18% VecXDot_Seq_Private.constprop.0 2753ms 2.14% 81.10% 2753ms 2.14% __memcpy_avx_unaligned_erms 368ms 0.29% 81.38% 2740ms 2.13% __ieee754_pow_fma 0 0% 81.38% 2724ms 2.12% PetscMemcpy (inline) 16ms 0.012% 81.40% 2362ms 1.84% VecCopy 21ms 0.016% 81.41% 2355ms 1.83% VecAXPY 2ms 0.0016% 81.41% 2344ms 1.82% VecCopy_Seq (partial-inline) 11ms 0.0086% 81.42% 2334ms 1.81% VecAXPY_Seq 2306ms 1.79% 83.22% 2306ms 1.79% daxpy_ 5ms 0.0039% 83.22% 2031ms 1.58% VecMDot 10ms 0.0078% 83.23% 2026ms 1.58% VecMXDot_Private 2ms 0.0016% 83.23% 2013ms 1.57% AbstractFeVolumeIntegralAssembler::DoAssemble 2002ms 1.56% 84.79% 2012ms 1.56% VecMDot_Seq 1597ms 1.24% 86.03% 1653ms 1.29% exp_inline (inline) 28ms 0.022% 86.05% 1651ms 1.28% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 86.05% 1395ms 1.08% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.05% 1274ms 0.99% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.05% 1274ms 0.99% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.05% 1274ms 0.99% boost_numeric_ublas_abs (inline) 1274ms 0.99% 87.04% 1274ms 0.99% std::abs (inline) 6ms 0.0047% 87.04% 1231ms 0.96% VecMAXPY 1221ms 0.95% 87.99% 1225ms 0.95% VecMAXPY_Seq 713ms 0.55% 88.55% 1044ms 0.81% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 9ms 0.007% 88.56% 1042ms 0.81% boost::numeric::ublas::matrix_assign (inline) 0 0% 88.56% 1035ms 0.8% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.56% 1035ms 0.8% CuboidMeshConstructor::Construct 2ms 0.0016% 88.56% 1035ms 0.8% DistributedTetrahedralMesh::ConstructCuboid 216ms 0.17% 88.73% 1029ms 0.8% boost::numeric::ublas::indexing_matrix_assign 978ms 0.76% 89.49% 978ms 0.76% [libchaste_heart.so] 2ms 0.0016% 89.49% 926ms 0.72% Element::Element 9ms 0.007% 89.49% 910ms 0.71% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00078% 89.50% 896ms 0.7% AbstractBidomainSolver::FinaliseLinearSystem 261ms 0.2% 89.70% 893ms 0.69% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 89.70% 856ms 0.67% AbstractTetrahedralElement::AbstractTetrahedralElement 2ms 0.0016% 89.70% 848ms 0.66% VecNorm 0 0% 89.70% 838ms 0.65% VecNorm_Seq 6ms 0.0047% 89.70% 837ms 0.65% BidomainAssembler::ComputeMatrixTerm 8ms 0.0062% 89.71% 801ms 0.62% boost::numeric::ublas::c_matrix::c_matrix (inline) 7ms 0.0054% 89.72% 771ms 0.6% VecScale 2ms 0.0016% 89.72% 764ms 0.59% VecScale_Seq 762ms 0.59% 90.31% 762ms 0.59% dscal_ 0 0% 90.31% 715ms 0.56% BidomainProblem::WriteOneStep 3ms 0.0023% 90.31% 715ms 0.56% VecDuplicate 705ms 0.55% 90.86% 705ms 0.55% __memset_avx2_unaligned_erms 0 0% 90.86% 698ms 0.54% PetscMemzero (inline) 683ms 0.53% 91.39% 683ms 0.53% log_inline (inline)