File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3627ms, 85.95% of 4220ms total Dropped 443 nodes (cum <= 21.10ms) flat flat% sum% cum cum% 0 0% 0% 4213ms 99.83% __libc_start_call_main 0 0% 0% 4213ms 99.83% __libc_start_main_impl 0 0% 0% 4213ms 99.83% _start 0 0% 0% 4211ms 99.79% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4211ms 99.79% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4211ms 99.79% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4211ms 99.79% main 0 0% 0% 4175ms 98.93% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4175ms 98.93% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4175ms 98.93% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4169ms 98.79% AbstractCardiacProblem::Solve 1ms 0.024% 0.047% 4153ms 98.41% AbstractDynamicLinearPdeSolver::Solve 15ms 0.36% 0.4% 2209ms 52.35% AbstractCardiacTissue::SolveCellSystems 0 0% 0.4% 1655ms 39.22% LinearSystem::Solve 0 0% 0.4% 1613ms 38.22% KSPSolve 3ms 0.071% 0.47% 1613ms 38.22% KSPSolve_Private 1ms 0.024% 0.5% 1566ms 37.11% KSPSolve_SYMMLQ 35ms 0.83% 1.33% 1278ms 30.28% AbstractCardiacCell::ComputeExceptVoltage 26ms 0.62% 1.94% 1072ms 25.40% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.024% 1.97% 984ms 23.32% PCApply 0 0% 1.97% 979ms 23.20% PCApply_BJacobi_Singleblock 51ms 1.21% 3.18% 898ms 21.28% EulerIvpOdeSolver::CalculateNextYValue 237ms 5.62% 8.79% 837ms 19.83% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 8.79% 817ms 19.36% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 8.82% 776ms 18.39% PCApply_ICC 5ms 0.12% 8.93% 775ms 18.36% MatSolve 759ms 17.99% 26.92% 764ms 18.10% MatSolve_SeqSBAIJ_1_NaturalOrdering 305ms 7.23% 34.15% 752ms 17.82% __GI___exp 17ms 0.4% 34.55% 728ms 17.25% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 34.55% 698ms 16.54% KSP_PCApply.lto_priv.18 238ms 5.64% 40.19% 687ms 16.28% CellLuoRudy1991FromCellML::GetIIonic 4ms 0.095% 40.28% 432ms 10.24% MatMult 407ms 9.64% 49.93% 430ms 10.19% __ieee754_exp_fma 4ms 0.095% 50.02% 424ms 10.05% MatMult_SeqAIJ 413ms 9.79% 59.81% 424ms 10.05% MatMult_SeqAIJ_Inode (inline) 4ms 0.095% 59.91% 378ms 8.96% KSPConvergedDefault 0 0% 59.91% 345ms 8.18% KSP_PCApply (partial-inline) 54ms 1.28% 61.18% 250ms 5.92% BidomainSolver::SetupLinearSystem 24ms 0.57% 61.75% 232ms 5.50% __pow 0 0% 61.75% 232ms 5.50% std::pow (inline) 26ms 0.62% 62.37% 208ms 4.93% __ieee754_pow_fma 76ms 1.80% 64.17% 150ms 3.55% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 64.17% 124ms 2.94% MatNullSpaceRemove 107ms 2.54% 66.71% 107ms 2.54% log_inline (inline) 0 0% 66.71% 101ms 2.39% VecDuplicate 89ms 2.11% 68.82% 89ms 2.11% ddot_ 0 0% 68.82% 85ms 2.01% VecMDot 7ms 0.17% 68.98% 85ms 2.01% VecMXDot_Private 26ms 0.62% 69.60% 84ms 1.99% MPI_Wtime 72ms 1.71% 71.30% 72ms 1.71% exp_inline (inline) 39ms 0.92% 72.23% 66ms 1.56% TimeStepper::TimeStepper 2ms 0.047% 72.27% 63ms 1.49% VecDot 9ms 0.21% 72.49% 58ms 1.37% PetscLogEventBeginDefault 58ms 1.37% 73.86% 58ms 1.37% [[vdso]] 0 0% 73.86% 58ms 1.37% __GI___clock_gettime 14ms 0.33% 74.19% 57ms 1.35% PetscLogEventEndDefault 2ms 0.047% 74.24% 55ms 1.30% VecNorm 7ms 0.17% 74.41% 54ms 1.28% VecCopy 0 0% 74.41% 54ms 1.28% VecDot_Seq 1ms 0.024% 74.43% 54ms 1.28% VecXDot_Seq_Private.constprop.0 26ms 0.62% 75.05% 52ms 1.23% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 75.05% 51ms 1.21% VecDuplicate_Seq 49ms 1.16% 76.21% 51ms 1.21% VecMDot_Seq 2ms 0.047% 76.26% 50ms 1.18% VecDuplicate_MPI 1ms 0.024% 76.28% 50ms 1.18% VecNorm_Seq 49ms 1.16% 77.44% 50ms 1.18% __ieee754_log_fma 42ms 1% 78.44% 49ms 1.16% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 3ms 0.071% 78.51% 47ms 1.11% VecDestroy 2ms 0.047% 78.55% 44ms 1.04% PetscTimeSubtract (inline) 2ms 0.047% 78.60% 44ms 1.04% VecCreate 35ms 0.83% 79.43% 43ms 1.02% AbstractOneStepIvpOdeSolver::Solve 15ms 0.36% 79.79% 39ms 0.92% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 79.79% 39ms 0.92% VecMAXPY 39ms 0.92% 80.71% 39ms 0.92% __memcpy_avx_unaligned_erms 36ms 0.85% 81.56% 36ms 0.85% TimeStepper::CalculateNextTime 0 0% 81.56% 36ms 0.85% VecAXPY 7ms 0.17% 81.73% 35ms 0.83% PetscMallocA 15ms 0.36% 82.09% 34ms 0.81% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 82.09% 34ms 0.81% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 82.09% 32ms 0.76% CxxTest::RealWorldDescription::setUp 0 0% 82.09% 32ms 0.76% PetscInitialize 0 0% 82.09% 32ms 0.76% PetscSetup::setUpWorld 0 0% 82.09% 32ms 0.76% PetscSetupUtils::CommonSetup 0 0% 82.09% 32ms 0.76% PetscSetupUtils::InitialisePetsc 0 0% 82.09% 31ms 0.73% PMPI_Init_thread 0 0% 82.09% 31ms 0.73% PetscMemcpy (inline) 0 0% 82.09% 31ms 0.73% ompi_mpi_init 1ms 0.024% 82.11% 29ms 0.69% VecSetType 1ms 0.024% 82.13% 28ms 0.66% PetscMallocAlign (partial-inline) 0 0% 82.13% 28ms 0.66% VecNorm_MPI 0 0% 82.13% 28ms 0.66% VecNorm_MPI_Default.constprop.0 28ms 0.66% 82.80% 28ms 0.66% std::isinf (inline) 1ms 0.024% 82.82% 27ms 0.64% VecCopy_Seq (partial-inline) 24ms 0.57% 83.39% 27ms 0.64% VecMAXPY_Seq 2ms 0.047% 83.44% 26ms 0.62% 24ms 0.57% 84.00% 26ms 0.62% AbstractParameterisedSystem::GetAnyVariable 0 0% 84.00% 25ms 0.59% PetscMemzero (inline) 10ms 0.24% 84.24% 25ms 0.59% TimeStepper::AdvanceOneTimeStep 24ms 0.57% 84.81% 24ms 0.57% [libchaste_heart.so] 24ms 0.57% 85.38% 24ms 0.57% __memset_avx2_unaligned_erms 15ms 0.36% 85.73% 24ms 0.57% top12 (inline) 2ms 0.047% 85.78% 23ms 0.55% PetscHeaderDestroy_Private 0 0% 85.78% 23ms 0.55% orte_init 7ms 0.17% 85.95% 22ms 0.52% std::__cxx11::basic_string::basic_string