File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108560ms, 91.81% of 118249ms total Dropped 1110 nodes (cum <= 591.25ms) flat flat% sum% cum cum% 0 0% 0% 118236ms 100% __libc_start_call_main 0 0% 0% 118236ms 100% __libc_start_main_impl 0 0% 0% 118236ms 100% _start 0 0% 0% 118233ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118233ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118233ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118233ms 100% main 0 0% 0% 118200ms 100% AbstractConvergenceTester::Converge 0 0% 0% 118200ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118200ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118200ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118200ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118200ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0034% 0.0034% 116947ms 98.90% AbstractCardiacProblem::Solve 13ms 0.011% 0.014% 116103ms 98.19% AbstractDynamicLinearPdeSolver::Solve 2ms 0.0017% 0.016% 64912ms 54.89% LinearSystem::Solve 1ms 0.00085% 0.017% 64431ms 54.49% KSPSolve 18ms 0.015% 0.032% 64430ms 54.49% KSPSolve_Private 14ms 0.012% 0.044% 64053ms 54.17% KSPSolve_SYMMLQ 191ms 0.16% 0.21% 42534ms 35.97% AbstractCardiacTissue::SolveCellSystems 3ms 0.0025% 0.21% 36661ms 31.00% PCApply 8ms 0.0068% 0.21% 36657ms 31.00% PCApply_BJacobi_Singleblock 0 0% 0.21% 34128ms 28.86% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.22% 33031ms 27.93% PCApply_ICC 7ms 0.0059% 0.22% 33029ms 27.93% MatSolve 32525ms 27.51% 27.73% 33022ms 27.93% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1405ms 1.19% 28.92% 32936ms 27.85% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00085% 28.92% 31636ms 26.75% KSP_PCApply.lto_priv.18 6924ms 5.86% 34.77% 28480ms 24.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.0051% 34.78% 21130ms 17.87% MatMult 314ms 0.27% 35.04% 21124ms 17.86% MatMult_SeqAIJ (partial-inline) 20578ms 17.40% 52.45% 21122ms 17.86% MatMult_SeqAIJ_Inode (inline) 1993ms 1.69% 54.13% 14779ms 12.50% CardiacNewtonSolver::Solve 312ms 0.26% 54.39% 8828ms 7.47% AbstractCardiacTissue::UpdateCaches (inline) 4486ms 3.79% 58.19% 8696ms 7.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1918ms 1.62% 59.81% 8323ms 7.04% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1109ms 0.94% 60.75% 7560ms 6.39% BidomainSolver::SetupLinearSystem 1225ms 1.04% 61.78% 7292ms 6.17% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00085% 61.78% 7009ms 5.93% KSP_PCApply (partial-inline) 5ms 0.0042% 61.79% 6440ms 5.45% KSPConvergedDefault 5830ms 4.93% 66.72% 5830ms 4.93% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3885ms 3.29% 70.00% 3919ms 3.31% __ieee754_log_fma 0 0% 70.00% 3663ms 3.10% boost::numeric::ublas::norm_inf (inline) 2456ms 2.08% 72.08% 3663ms 3.10% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.08% 3663ms 3.10% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.08% 3663ms 3.10% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 5ms 0.0042% 72.09% 3299ms 2.79% MatNullSpaceRemove 3190ms 2.70% 74.78% 3190ms 2.70% __memcpy_avx_unaligned_erms 0 0% 74.78% 3154ms 2.67% PetscMemcpy (inline) 20ms 0.017% 74.80% 3134ms 2.65% std::pow (inline) 395ms 0.33% 75.13% 3111ms 2.63% __pow 1735ms 1.47% 76.60% 2880ms 2.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2872ms 2.43% 79.03% 2872ms 2.43% ddot_ 368ms 0.31% 79.34% 2707ms 2.29% __ieee754_pow_fma 15ms 0.013% 79.35% 2689ms 2.27% VecCopy 2ms 0.0017% 79.36% 2672ms 2.26% VecCopy_Seq (partial-inline) 17ms 0.014% 79.37% 2432ms 2.06% VecAXPY 6ms 0.0051% 79.38% 2415ms 2.04% VecAXPY_Seq 2402ms 2.03% 81.41% 2402ms 2.03% daxpy_ 2ms 0.0017% 81.41% 2308ms 1.95% VecDot 3ms 0.0025% 81.41% 2306ms 1.95% VecDot_Seq 5ms 0.0042% 81.42% 2303ms 1.95% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.42% 2066ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 3ms 0.0025% 81.42% 1846ms 1.56% VecMDot 16ms 0.014% 81.43% 1843ms 1.56% VecMXDot_Private 1810ms 1.53% 82.96% 1824ms 1.54% VecMDot_Seq 28ms 0.024% 82.99% 1724ms 1.46% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1550ms 1.31% 84.30% 1612ms 1.36% exp_inline (inline) 1450ms 1.23% 85.52% 1450ms 1.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 8ms 0.0068% 85.53% 1448ms 1.22% VecMAXPY 1428ms 1.21% 86.74% 1440ms 1.22% VecMAXPY_Seq 0 0% 86.74% 1419ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 6ms 0.0051% 86.74% 1137ms 0.96% boost::numeric::ublas::matrix_assign (inline) 1121ms 0.95% 87.69% 1121ms 0.95% __memset_avx2_unaligned_erms 233ms 0.2% 87.89% 1116ms 0.94% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.89% 1108ms 0.94% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.89% 1108ms 0.94% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.89% 1108ms 0.94% boost_numeric_ublas_abs (inline) 1108ms 0.94% 88.83% 1108ms 0.94% std::abs (inline) 0 0% 88.83% 1104ms 0.93% PetscMemzero (inline) 0 0% 88.83% 1100ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.83% 1100ms 0.93% CuboidMeshConstructor::Construct 4ms 0.0034% 88.83% 1100ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 2ms 0.0017% 88.83% 1066ms 0.9% KSP_RemoveNullSpace (inline) 768ms 0.65% 89.48% 1029ms 0.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 3ms 0.0025% 89.48% 1002ms 0.85% Element::Element 2ms 0.0017% 89.48% 999ms 0.84% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.49% 946ms 0.8% AbstractTetrahedralElement::AbstractTetrahedralElement 7ms 0.0059% 89.49% 930ms 0.79% VecScale 3ms 0.0025% 89.50% 923ms 0.78% VecScale_Seq 919ms 0.78% 90.27% 919ms 0.78% dscal_ 3ms 0.0025% 90.27% 904ms 0.76% BidomainAssembler::ComputeMatrixTerm 4ms 0.0034% 90.28% 890ms 0.75% boost::numeric::ublas::c_matrix::c_matrix (inline) 1ms 0.00085% 90.28% 889ms 0.75% VecDuplicate 854ms 0.72% 91.00% 854ms 0.72% [libchaste_heart.so] 2ms 0.0017% 91.00% 831ms 0.7% VecNorm 4ms 0.0034% 91.01% 823ms 0.7% VecNorm_Seq 1ms 0.00085% 91.01% 781ms 0.66% BidomainProblem::WriteOneStep 0 0% 91.01% 780ms 0.66% AbstractBidomainSolver::FinaliseLinearSystem 14ms 0.012% 91.02% 779ms 0.66% PetscMallocA 226ms 0.19% 91.21% 778ms 0.66% AbstractBidomainSolver::CheckCompatibilityCondition 4ms 0.0034% 91.21% 765ms 0.65% PetscMallocAlign (partial-inline) 701ms 0.59% 91.81% 701ms 0.59% log_inline (inline) 0 0% 91.81% 647ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.81% 595ms 0.5% boost::numeric::ublas::matrix_slice::operator= (inline)