File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110627ms, 91.81% of 120500ms total Dropped 1128 nodes (cum <= 602.50ms) flat flat% sum% cum cum% 0 0% 0% 120481ms 100% __libc_start_call_main 0 0% 0% 120481ms 100% __libc_start_main_impl 0 0% 0% 120481ms 100% _start 0 0% 0% 120478ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120478ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120478ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120478ms 100% main 0 0% 0% 120445ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120445ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120445ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120445ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120445ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120445ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 119195ms 98.92% AbstractCardiacProblem::Solve 3ms 0.0025% 0.0058% 118375ms 98.24% AbstractDynamicLinearPdeSolver::Solve 4ms 0.0033% 0.0091% 66722ms 55.37% LinearSystem::Solve 0 0% 0.0091% 66189ms 54.93% KSPSolve 15ms 0.012% 0.022% 66189ms 54.93% KSPSolve_Private 8ms 0.0066% 0.028% 65736ms 54.55% KSPSolve_SYMMLQ 188ms 0.16% 0.18% 42616ms 35.37% AbstractCardiacTissue::SolveCellSystems 5ms 0.0041% 0.19% 36746ms 30.49% PCApply 4ms 0.0033% 0.19% 36736ms 30.49% PCApply_BJacobi_Singleblock 0 0% 0.19% 34202ms 28.38% KSPSolve_PREONLY (partial-inline) 1ms 0.00083% 0.19% 33139ms 27.50% PCApply_ICC 6ms 0.005% 0.2% 33138ms 27.50% MatSolve 32651ms 27.10% 27.29% 33132ms 27.50% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1364ms 1.13% 28.43% 32692ms 27.13% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0033% 28.43% 31690ms 26.30% KSP_PCApply.lto_priv.18 6860ms 5.69% 34.12% 28244ms 23.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 11ms 0.0091% 34.13% 23252ms 19.30% MatMult 219ms 0.18% 34.31% 23241ms 19.29% MatMult_SeqAIJ (partial-inline) 22723ms 18.86% 53.17% 23240ms 19.29% MatMult_SeqAIJ_Inode (inline) 1997ms 1.66% 54.83% 14637ms 12.15% CardiacNewtonSolver::Solve 393ms 0.33% 55.15% 9117ms 7.57% AbstractCardiacTissue::UpdateCaches (inline) 4366ms 3.62% 58.78% 8533ms 7.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1937ms 1.61% 60.38% 8514ms 7.07% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1155ms 0.96% 61.34% 8081ms 6.71% BidomainSolver::SetupLinearSystem 1002ms 0.83% 62.17% 7131ms 5.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0017% 62.18% 7007ms 5.81% KSP_PCApply (partial-inline) 5ms 0.0041% 62.18% 6422ms 5.33% KSPConvergedDefault 5873ms 4.87% 67.05% 5873ms 4.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3880ms 3.22% 70.27% 3911ms 3.25% __ieee754_log_fma 0 0% 70.27% 3698ms 3.07% boost::numeric::ublas::norm_inf (inline) 2480ms 2.06% 72.33% 3698ms 3.07% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.33% 3698ms 3.07% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.33% 3698ms 3.07% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 33ms 0.027% 72.36% 3342ms 2.77% std::pow (inline) 8ms 0.0066% 72.37% 3307ms 2.74% MatNullSpaceRemove 408ms 0.34% 72.70% 3305ms 2.74% __pow 3237ms 2.69% 75.39% 3237ms 2.69% __memcpy_avx_unaligned_erms 0 0% 75.39% 3201ms 2.66% PetscMemcpy (inline) 1728ms 1.43% 76.82% 2899ms 2.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 390ms 0.32% 77.15% 2858ms 2.37% __ieee754_pow_fma 2823ms 2.34% 79.49% 2823ms 2.34% ddot_ 15ms 0.012% 79.50% 2740ms 2.27% VecCopy 2ms 0.0017% 79.51% 2725ms 2.26% VecCopy_Seq (partial-inline) 17ms 0.014% 79.52% 2453ms 2.04% VecAXPY 7ms 0.0058% 79.53% 2436ms 2.02% VecAXPY_Seq 2417ms 2.01% 81.53% 2417ms 2.01% daxpy_ 2ms 0.0017% 81.53% 2362ms 1.96% VecDot 0 0% 81.53% 2360ms 1.96% VecDot_Seq 1ms 0.00083% 81.53% 2360ms 1.96% VecXDot_Seq_Private.constprop.0 1ms 0.00083% 81.53% 2115ms 1.76% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.53% 1871ms 1.55% VecMDot 13ms 0.011% 81.55% 1871ms 1.55% VecMXDot_Private 1837ms 1.52% 83.07% 1851ms 1.54% VecMDot_Seq 41ms 0.034% 83.10% 1774ms 1.47% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1577ms 1.31% 84.41% 1620ms 1.34% exp_inline (inline) 1479ms 1.23% 85.64% 1479ms 1.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.64% 1437ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 7ms 0.0058% 85.65% 1428ms 1.19% VecMAXPY 1413ms 1.17% 86.82% 1421ms 1.18% VecMAXPY_Seq 9ms 0.0075% 86.83% 1177ms 0.98% boost::numeric::ublas::matrix_assign (inline) 223ms 0.19% 87.01% 1161ms 0.96% boost::numeric::ublas::indexing_matrix_assign 1140ms 0.95% 87.96% 1140ms 0.95% __memset_avx2_unaligned_erms 0 0% 87.96% 1127ms 0.94% PetscMemzero (inline) 0 0% 87.96% 1122ms 0.93% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.96% 1122ms 0.93% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.96% 1122ms 0.93% boost_numeric_ublas_abs (inline) 1122ms 0.93% 88.89% 1122ms 0.93% std::abs (inline) 0 0% 88.89% 1100ms 0.91% CuboidMeshConstructor::Construct 0 0% 88.89% 1099ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00083% 88.89% 1099ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 813ms 0.67% 89.56% 1087ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.0033% 89.57% 1074ms 0.89% KSP_RemoveNullSpace (inline) 3ms 0.0025% 89.57% 992ms 0.82% Element::Element 4ms 0.0033% 89.57% 977ms 0.81% AbstractTetrahedralElement::CalculateJacobian 0 0% 89.57% 926ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 3ms 0.0025% 89.58% 925ms 0.77% BidomainAssembler::ComputeMatrixTerm 4ms 0.0033% 89.58% 917ms 0.76% VecDuplicate 5ms 0.0041% 89.58% 898ms 0.75% boost::numeric::ublas::c_matrix::c_matrix (inline) 13ms 0.011% 89.59% 885ms 0.73% VecScale 4ms 0.0033% 89.60% 872ms 0.72% VecScale_Seq 865ms 0.72% 90.31% 865ms 0.72% dscal_ 811ms 0.67% 90.99% 811ms 0.67% [libchaste_heart.so] 807ms 0.67% 91.66% 807ms 0.67% log_inline (inline) 10ms 0.0083% 91.67% 774ms 0.64% PetscMallocA 9ms 0.0075% 91.67% 764ms 0.63% PetscMallocAlign (partial-inline) 0 0% 91.67% 761ms 0.63% BidomainProblem::WriteOneStep 6ms 0.005% 91.68% 724ms 0.6% VecNorm 0 0% 91.68% 715ms 0.59% VecNorm_Seq 0 0% 91.68% 678ms 0.56% AbstractFeAssemblerInterface::Assemble (inline) 2ms 0.0017% 91.68% 656ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 153ms 0.13% 91.81% 653ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition