File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 2861ms, 86.10% of 3323ms total Dropped 435 nodes (cum <= 16.61ms) flat flat% sum% cum cum% 0 0% 0% 3317ms 99.82% __libc_start_call_main 0 0% 0% 3317ms 99.82% __libc_start_main_impl 0 0% 0% 3317ms 99.82% _start 0 0% 0% 3315ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3315ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3315ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3315ms 99.76% main 0 0% 0% 3280ms 98.71% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3280ms 98.71% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3280ms 98.71% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.03% 0.03% 3275ms 98.56% AbstractCardiacProblem::Solve 2ms 0.06% 0.09% 3259ms 98.07% AbstractDynamicLinearPdeSolver::Solve 1ms 0.03% 0.12% 1570ms 47.25% LinearSystem::Solve 0 0% 0.12% 1532ms 46.10% KSPSolve 5ms 0.15% 0.27% 1532ms 46.10% KSPSolve_Private 3ms 0.09% 0.36% 1495ms 44.99% KSPSolve_SYMMLQ 14ms 0.42% 0.78% 1389ms 41.80% AbstractCardiacTissue::SolveCellSystems 3ms 0.09% 0.87% 975ms 29.34% PCApply 1ms 0.03% 0.9% 963ms 28.98% PCApply_BJacobi_Singleblock 0 0% 0.9% 806ms 24.26% KSPSolve_PREONLY (partial-inline) 21ms 0.63% 1.53% 767ms 23.08% AbstractCardiacCell::ComputeExceptVoltage 1ms 0.03% 1.56% 760ms 22.87% PCApply_ICC 1ms 0.03% 1.59% 759ms 22.84% MatSolve 752ms 22.63% 24.23% 754ms 22.69% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 24.23% 707ms 21.28% KSP_PCApply.lto_priv.18 19ms 0.57% 24.80% 654ms 19.68% AbstractOneStepIvpOdeSolver::InternalSolve 42ms 1.26% 26.06% 534ms 16.07% EulerIvpOdeSolver::CalculateNextYValue 7ms 0.21% 26.27% 490ms 14.75% AbstractCardiacTissue::UpdateCaches (inline) 133ms 4.00% 30.27% 483ms 14.54% CellLuoRudy1991FromCellML::EvaluateYDerivatives 168ms 5.06% 35.33% 460ms 13.84% CellLuoRudy1991FromCellML::GetIIonic 212ms 6.38% 41.71% 456ms 13.72% __GI___exp 4ms 0.12% 41.83% 413ms 12.43% MatMult 9ms 0.27% 42.10% 398ms 11.98% MatMult_SeqAIJ (partial-inline) 388ms 11.68% 53.78% 398ms 11.98% MatMult_SeqAIJ_Inode (inline) 1ms 0.03% 53.81% 358ms 10.77% KSPConvergedDefault 0 0% 53.81% 341ms 10.26% KSP_PCApply (partial-inline) 39ms 1.17% 54.98% 261ms 7.85% BidomainSolver::SetupLinearSystem 191ms 5.75% 60.73% 236ms 7.10% __ieee754_exp_fma 1ms 0.03% 60.76% 138ms 4.15% std::pow (inline) 20ms 0.6% 61.36% 137ms 4.12% __pow 1ms 0.03% 61.39% 133ms 4.00% MatNullSpaceRemove 8ms 0.24% 61.63% 116ms 3.49% __ieee754_pow_fma 30ms 0.9% 62.53% 101ms 3.04% MPI_Wtime 0 0% 62.53% 92ms 2.77% VecMDot 6ms 0.18% 62.71% 92ms 2.77% VecMXDot_Private 1ms 0.03% 62.74% 90ms 2.71% VecDuplicate 39ms 1.17% 63.92% 77ms 2.32% CellLuoRudy1991FromCellML::VerifyStateVariables 74ms 2.23% 66.15% 74ms 2.23% ddot_ 1ms 0.03% 66.18% 71ms 2.14% __GI___clock_gettime 70ms 2.11% 68.28% 70ms 2.11% [[vdso]] 9ms 0.27% 68.55% 69ms 2.08% PetscLogEventBeginDefault 10ms 0.3% 68.85% 68ms 2.05% PetscLogEventEndDefault 67ms 2.02% 70.87% 68ms 2.05% VecMDot_Seq 6ms 0.18% 71.05% 60ms 1.81% VecCopy 59ms 1.78% 72.83% 59ms 1.78% log_inline (inline) 3ms 0.09% 72.92% 55ms 1.66% VecNorm 6ms 0.18% 73.10% 47ms 1.41% PetscMallocA 2ms 0.06% 73.16% 46ms 1.38% PetscTimeSubtract (inline) 1ms 0.03% 73.19% 46ms 1.38% VecDuplicate_Seq 3ms 0.09% 73.28% 45ms 1.35% VecDestroy 45ms 1.35% 74.63% 45ms 1.35% exp_inline (inline) 15ms 0.45% 75.08% 44ms 1.32% TimeStepper::TimeStepper 1ms 0.03% 75.11% 43ms 1.29% VecDuplicate_MPI 0 0% 75.11% 42ms 1.26% VecNorm_Seq 42ms 1.26% 76.38% 42ms 1.26% __memcpy_avx512_unaligned_erms 3ms 0.09% 76.47% 41ms 1.23% PetscMallocAlign 0 0% 76.47% 40ms 1.20% VecDot 4ms 0.12% 76.59% 40ms 1.20% VecMAXPY 1ms 0.03% 76.62% 39ms 1.17% VecCreate 8ms 0.24% 76.86% 38ms 1.14% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 76.86% 37ms 1.11% VecDot_Seq 0 0% 76.86% 37ms 1.11% VecXDot_Seq_Private.constprop.0 35ms 1.05% 77.91% 35ms 1.05% [libchaste_heart.so] 32ms 0.96% 78.87% 35ms 1.05% top12 (inline) 2ms 0.06% 78.93% 34ms 1.02% VecAXPY 0 0% 78.93% 32ms 0.96% CxxTest::RealWorldDescription::setUp 0 0% 78.93% 32ms 0.96% PetscInitialize 0 0% 78.93% 32ms 0.96% PetscSetup::setUpWorld 0 0% 78.93% 32ms 0.96% PetscSetupUtils::CommonSetup 0 0% 78.93% 32ms 0.96% PetscSetupUtils::InitialisePetsc 0 0% 78.93% 31ms 0.93% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 78.93% 31ms 0.93% PMPI_Init_thread 0 0% 78.93% 31ms 0.93% ompi_mpi_init 11ms 0.33% 79.27% 30ms 0.9% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 79.27% 30ms 0.9% PetscMemcpy (inline) 29ms 0.87% 80.14% 29ms 0.87% TimeStepper::CalculateNextTime 0 0% 80.14% 28ms 0.84% 22ms 0.66% 80.80% 26ms 0.78% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 25ms 0.75% 81.55% 26ms 0.78% AbstractParameterisedSystem::SetAnyVariable 0 0% 81.55% 25ms 0.75% VecCopy_Seq (partial-inline) 6ms 0.18% 81.73% 24ms 0.72% PetscHeaderDestroy_Private 15ms 0.45% 82.18% 24ms 0.72% TimeStepper::AdvanceOneTimeStep 23ms 0.69% 82.88% 24ms 0.72% VecMAXPY_Seq 1ms 0.03% 82.91% 24ms 0.72% VecSetType 0 0% 82.91% 23ms 0.69% VecNorm_MPI 1ms 0.03% 82.94% 23ms 0.69% VecNorm_MPI_Default.constprop.0 1ms 0.03% 82.97% 23ms 0.69% __posix_memalign 10ms 0.3% 83.27% 22ms 0.66% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 21ms 0.63% 83.90% 22ms 0.66% __ieee754_log_fma 0 0% 83.90% 22ms 0.66% orte_init 2ms 0.06% 83.96% 21ms 0.63% VecCreate_MPI_Private 5ms 0.15% 84.11% 21ms 0.63% __GI___libc_malloc 19ms 0.57% 84.68% 19ms 0.57% DistributedVector::Stripe::operator[] (inline) 12ms 0.36% 85.04% 18ms 0.54% AbstractOneStepIvpOdeSolver::Solve 1ms 0.03% 85.07% 18ms 0.54% PetscHeaderCreate_Private 18ms 0.54% 85.62% 18ms 0.54% asuint64 (inline) 0 0% 85.62% 18ms 0.54% std::vector::_M_assign_aux (inline) 0 0% 85.62% 18ms 0.54% std::vector::assign (inline) 16ms 0.48% 86.10% 17ms 0.51% AbstractParameterisedSystem::GetAnyVariable