File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3715ms, 86.74% of 4283ms total Dropped 498 nodes (cum <= 21.41ms) flat flat% sum% cum cum% 0 0% 0% 4272ms 99.74% __libc_start_call_main 0 0% 0% 4272ms 99.74% __libc_start_main_impl 0 0% 0% 4272ms 99.74% _start 0 0% 0% 4268ms 99.65% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4268ms 99.65% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4268ms 99.65% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4268ms 99.65% main 0 0% 0% 4219ms 98.51% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4219ms 98.51% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4219ms 98.51% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 0 0% 0% 4210ms 98.30% AbstractCardiacProblem::Solve 0 0% 0% 4200ms 98.06% AbstractDynamicLinearPdeSolver::Solve 17ms 0.4% 0.4% 1966ms 45.90% AbstractCardiacTissue::SolveCellSystems 0 0% 0.4% 1823ms 42.56% LinearSystem::Solve 0 0% 0.4% 1759ms 41.07% KSPSolve 4ms 0.093% 0.49% 1759ms 41.07% KSPSolve_Private 3ms 0.07% 0.56% 1707ms 39.86% KSPSolve_CG 42ms 0.98% 1.54% 1367ms 31.92% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 270ms 6.30% 7.84% 1231ms 28.74% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 1ms 0.023% 7.87% 954ms 22.27% PCApply 0 0% 7.87% 946ms 22.09% PCApply_BJacobi_Singleblock 0 0% 7.87% 789ms 18.42% KSPSolve_PREONLY (partial-inline) 3ms 0.07% 7.94% 748ms 17.46% MatSolve 0 0% 7.94% 748ms 17.46% PCApply_ICC 0 0% 7.94% 742ms 17.32% KSP_PCApply.lto_priv.7 739ms 17.25% 25.19% 741ms 17.30% MatSolve_SeqSBAIJ_1_NaturalOrdering 3ms 0.07% 25.26% 652ms 15.22% MatMult 22ms 0.51% 25.78% 638ms 14.90% MatMult_SeqAIJ (partial-inline) 615ms 14.36% 40.14% 638ms 14.90% MatMult_SeqAIJ_Inode (inline) 73ms 1.70% 41.84% 575ms 13.43% CardiacNewtonSolver::Solve 7ms 0.16% 42.00% 536ms 12.51% AbstractCardiacTissue::UpdateCaches (inline) 129ms 3.01% 45.02% 496ms 11.58% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 196ms 4.58% 49.59% 358ms 8.36% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 70ms 1.63% 51.23% 354ms 8.27% BidomainSolver::SetupLinearSystem 61ms 1.42% 52.65% 310ms 7.24% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.023% 52.67% 306ms 7.14% KSPConvergedDefault 0 0% 52.67% 298ms 6.96% KSP_PCApply (partial-inline) 237ms 5.53% 58.21% 237ms 5.53% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 27ms 0.63% 58.84% 230ms 5.37% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 58.84% 197ms 4.60% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 43ms 1.00% 59.84% 197ms 4.60% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 168ms 3.92% 63.76% 171ms 3.99% __ieee754_log_fma 0 0% 63.76% 169ms 3.95% std::pow (inline) 20ms 0.47% 64.23% 167ms 3.90% __pow 28ms 0.65% 64.88% 146ms 3.41% __ieee754_pow_fma 1ms 0.023% 64.91% 135ms 3.15% MatNullSpaceRemove 0 0% 64.91% 130ms 3.04% boost::numeric::ublas::norm_inf (inline) 95ms 2.22% 67.13% 130ms 3.04% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 67.13% 130ms 3.04% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 67.13% 130ms 3.04% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 59ms 1.38% 68.50% 121ms 2.83% __GI___exp 117ms 2.73% 71.24% 117ms 2.73% ddot_ 1ms 0.023% 71.26% 107ms 2.50% VecDuplicate 55ms 1.28% 72.54% 89ms 2.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 0 0% 72.54% 86ms 2.01% VecTDot 80ms 1.87% 74.41% 82ms 1.91% exp_inline (inline) 0 0% 74.41% 80ms 1.87% VecMDot 4ms 0.093% 74.50% 80ms 1.87% VecMXDot_Private 21ms 0.49% 74.99% 79ms 1.84% MPI_Wtime 5ms 0.12% 75.11% 78ms 1.82% VecNorm 0 0% 75.11% 74ms 1.73% VecTDot_Seq 0 0% 75.11% 74ms 1.73% VecXDot_Seq_Private.constprop.0 15ms 0.35% 75.46% 66ms 1.54% PetscLogEventEndDefault 1ms 0.023% 75.48% 65ms 1.52% VecDuplicate_MPI 2ms 0.047% 75.53% 59ms 1.38% VecNorm_Seq 2ms 0.047% 75.58% 58ms 1.35% KSP_RemoveNullSpace (inline) 58ms 1.35% 76.93% 58ms 1.35% [[vdso]] 0 0% 76.93% 58ms 1.35% __GI___clock_gettime 11ms 0.26% 77.19% 55ms 1.28% PetscMallocA 53ms 1.24% 78.43% 55ms 1.28% VecMDot_Seq 5ms 0.12% 78.54% 54ms 1.26% VecMAXPY 8ms 0.19% 78.73% 51ms 1.19% PetscLogEventBeginDefault 1ms 0.023% 78.75% 49ms 1.14% VecDestroy 15ms 0.35% 79.10% 48ms 1.12% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 79.10% 48ms 1.12% AbstractBidomainSolver::FinaliseLinearSystem 46ms 1.07% 80.18% 46ms 1.07% [libchaste_heart.so] 0 0% 80.18% 44ms 1.03% CxxTest::RealWorldDescription::setUp 0 0% 80.18% 44ms 1.03% PMPI_Init_thread 0 0% 80.18% 44ms 1.03% PetscInitialize 1ms 0.023% 80.20% 44ms 1.03% PetscMallocAlign (partial-inline) 0 0% 80.20% 44ms 1.03% PetscSetup::setUpWorld 0 0% 80.20% 44ms 1.03% PetscSetupUtils::CommonSetup 0 0% 80.20% 44ms 1.03% PetscSetupUtils::InitialisePetsc 0 0% 80.20% 44ms 1.03% ompi_mpi_init 1ms 0.023% 80.22% 42ms 0.98% VecCreate 1ms 0.023% 80.25% 41ms 0.96% VecDuplicate_Seq 33ms 0.77% 81.02% 40ms 0.93% __ieee754_exp_fma 3ms 0.07% 81.09% 39ms 0.91% 4ms 0.093% 81.18% 36ms 0.84% VecCreate_MPI_Private 0 0% 81.18% 35ms 0.82% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 81.18% 35ms 0.82% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 81.18% 35ms 0.82% boost_numeric_ublas_abs (inline) 35ms 0.82% 82.00% 35ms 0.82% std::abs (inline) 32ms 0.75% 82.75% 32ms 0.75% log_inline (inline) 8ms 0.19% 82.93% 31ms 0.72% VecCopy 29ms 0.68% 83.61% 29ms 0.68% [libm.so.6] 28ms 0.65% 84.26% 28ms 0.65% DistributedVector::Iterator::operator!= 28ms 0.65% 84.92% 28ms 0.65% VecMAXPY_Seq 0 0% 84.92% 27ms 0.63% PetscMemzero (inline) 0 0% 84.92% 27ms 0.63% orte_init 26ms 0.61% 85.52% 26ms 0.61% DistributedVector::Stripe::operator[] (inline) 1ms 0.023% 85.55% 25ms 0.58% VecAYPX 2ms 0.047% 85.59% 25ms 0.58% VecSetType 25ms 0.58% 86.18% 25ms 0.58% __memset_avx2_unaligned_erms 0 0% 86.18% 24ms 0.56% VecNorm_MPI 0 0% 86.18% 24ms 0.56% VecNorm_MPI_Default.constprop.0 0 0% 86.18% 23ms 0.54% AbstractFeVolumeIntegralAssembler::DoAssemble 21ms 0.49% 86.67% 22ms 0.51% VecAYPX_Seq 3ms 0.07% 86.74% 22ms 0.51% __posix_memalign