File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3666ms, 85.71% of 4277ms total Dropped 481 nodes (cum <= 21.39ms) flat flat% sum% cum cum% 0 0% 0% 4267ms 99.77% __libc_start_call_main 0 0% 0% 4267ms 99.77% __libc_start_main_impl 0 0% 0% 4267ms 99.77% _start 0 0% 0% 4263ms 99.67% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4263ms 99.67% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4263ms 99.67% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4263ms 99.67% main 0 0% 0% 4217ms 98.60% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4217ms 98.60% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4217ms 98.60% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.023% 0.023% 4209ms 98.41% AbstractCardiacProblem::Solve 1ms 0.023% 0.047% 4185ms 97.85% AbstractDynamicLinearPdeSolver::Solve 20ms 0.47% 0.51% 2152ms 50.32% AbstractCardiacTissue::SolveCellSystems 0 0% 0.51% 1646ms 38.48% LinearSystem::Solve 0 0% 0.51% 1585ms 37.06% KSPSolve 1ms 0.023% 0.54% 1585ms 37.06% KSPSolve_Private 1ms 0.023% 0.56% 1531ms 35.80% KSPSolve_SYMMLQ 19ms 0.44% 1.01% 1191ms 27.85% AbstractCardiacCell::ComputeExceptVoltage 30ms 0.7% 1.71% 1030ms 24.08% AbstractOneStepIvpOdeSolver::InternalSolve 3ms 0.07% 1.78% 977ms 22.84% PCApply 1ms 0.023% 1.80% 968ms 22.63% PCApply_BJacobi_Singleblock 50ms 1.17% 2.97% 848ms 19.83% EulerIvpOdeSolver::CalculateNextYValue 0 0% 2.97% 832ms 19.45% KSPSolve_PREONLY (partial-inline) 197ms 4.61% 7.58% 789ms 18.45% CellLuoRudy1991FromCellML::EvaluateYDerivatives 2ms 0.047% 7.62% 786ms 18.38% MatSolve 0 0% 7.62% 786ms 18.38% PCApply_ICC 31ms 0.72% 8.35% 775ms 18.12% AbstractCardiacTissue::UpdateCaches (inline) 768ms 17.96% 26.30% 773ms 18.07% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 378ms 8.84% 35.14% 746ms 17.44% __GI___exp 225ms 5.26% 40.40% 702ms 16.41% CellLuoRudy1991FromCellML::GetIIonic 0 0% 40.40% 681ms 15.92% KSP_PCApply.lto_priv.18 5ms 0.12% 40.52% 451ms 10.54% MatMult 14ms 0.33% 40.85% 440ms 10.29% MatMult_SeqAIJ (partial-inline) 423ms 9.89% 50.74% 440ms 10.29% MatMult_SeqAIJ_Inode (inline) 1ms 0.023% 50.76% 378ms 8.84% KSPConvergedDefault 0 0% 50.76% 358ms 8.37% KSP_PCApply (partial-inline) 296ms 6.92% 57.68% 355ms 8.30% __ieee754_exp_fma 68ms 1.59% 59.27% 338ms 7.90% BidomainSolver::SetupLinearSystem 1ms 0.023% 59.29% 254ms 5.94% std::pow (inline) 32ms 0.75% 60.04% 253ms 5.92% __pow 17ms 0.4% 60.44% 221ms 5.17% __ieee754_pow_fma 50ms 1.17% 61.61% 119ms 2.78% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 61.61% 110ms 2.57% MatNullSpaceRemove 107ms 2.50% 64.11% 107ms 2.50% log_inline (inline) 1ms 0.023% 64.13% 105ms 2.45% VecDuplicate 22ms 0.51% 64.65% 88ms 2.06% MPI_Wtime 84ms 1.96% 66.61% 88ms 2.06% exp_inline (inline) 79ms 1.85% 68.46% 79ms 1.85% ddot_ 30ms 0.7% 69.16% 73ms 1.71% TimeStepper::TimeStepper 0 0% 69.16% 72ms 1.68% VecMDot 5ms 0.12% 69.28% 72ms 1.68% VecMXDot_Private 1ms 0.023% 69.30% 66ms 1.54% __GI___clock_gettime 3ms 0.07% 69.37% 65ms 1.52% VecDestroy 65ms 1.52% 70.89% 65ms 1.52% [[vdso]] 13ms 0.3% 71.19% 64ms 1.50% PetscLogEventEndDefault 2ms 0.047% 71.24% 64ms 1.50% VecDuplicate_MPI 63ms 1.47% 72.71% 63ms 1.47% [libchaste_heart.so] 0 0% 72.71% 62ms 1.45% VecDot 1ms 0.023% 72.74% 61ms 1.43% VecNorm 8ms 0.19% 72.92% 59ms 1.38% PetscLogEventBeginDefault 13ms 0.3% 73.23% 52ms 1.22% PetscMallocA 0 0% 73.23% 52ms 1.22% VecDot_Seq 0 0% 73.23% 52ms 1.22% VecXDot_Seq_Private.constprop.0 5ms 0.12% 73.35% 50ms 1.17% VecCopy 4ms 0.094% 73.44% 49ms 1.15% VecAXPY 47ms 1.10% 74.54% 49ms 1.15% VecMDot_Seq 34ms 0.79% 75.33% 47ms 1.10% top12 (inline) 2ms 0.047% 75.38% 46ms 1.08% VecNorm_Seq 2ms 0.047% 75.43% 45ms 1.05% PetscTimeSubtract (inline) 44ms 1.03% 76.46% 44ms 1.03% TimeStepper::CalculateNextTime 35ms 0.82% 77.27% 43ms 1.01% AbstractOneStepIvpOdeSolver::Solve 0 0% 77.27% 42ms 0.98% CxxTest::RealWorldDescription::setUp 0 0% 77.27% 42ms 0.98% PetscSetup::setUpWorld 0 0% 77.27% 42ms 0.98% PetscSetupUtils::CommonSetup 0 0% 77.27% 42ms 0.98% PetscSetupUtils::InitialisePetsc 10ms 0.23% 77.51% 41ms 0.96% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 77.51% 41ms 0.96% PMPI_Init_thread 0 0% 77.51% 41ms 0.96% PetscInitialize 41ms 0.96% 78.47% 41ms 0.96% asuint64 (inline) 0 0% 78.47% 41ms 0.96% ompi_mpi_init 0 0% 78.47% 40ms 0.94% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.023% 78.49% 40ms 0.94% VecDuplicate_Seq 8ms 0.19% 78.68% 39ms 0.91% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.047% 78.72% 39ms 0.91% PetscMallocAlign 0 0% 78.72% 39ms 0.91% VecCreate_MPI_Private 39ms 0.91% 79.64% 39ms 0.91% __memcpy_avx_unaligned_erms 1ms 0.023% 79.66% 38ms 0.89% VecCreate 2ms 0.047% 79.71% 38ms 0.89% VecMAXPY 2ms 0.047% 79.75% 35ms 0.82% 34ms 0.79% 80.55% 34ms 0.79% DistributedVector::Iterator::operator!= 1ms 0.023% 80.57% 32ms 0.75% VecAXPY_Seq 23ms 0.54% 81.11% 30ms 0.7% AbstractParameterisedSystem::GetAnyVariable 2ms 0.047% 81.16% 30ms 0.7% PetscHeaderDestroy_Private 0 0% 81.16% 30ms 0.7% PetscMemcpy (inline) 0 0% 81.16% 30ms 0.7% VecNorm_MPI 0 0% 81.16% 30ms 0.7% VecNorm_MPI_Default.constprop.0 27ms 0.63% 81.79% 30ms 0.7% __ieee754_log_fma 22ms 0.51% 82.30% 29ms 0.68% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 2ms 0.047% 82.35% 28ms 0.65% VecStashCreate_Private 5ms 0.12% 82.46% 28ms 0.65% __posix_memalign 25ms 0.58% 83.05% 27ms 0.63% AbstractParameterisedSystem::SetAnyVariable 18ms 0.42% 83.47% 27ms 0.63% TimeStepper::AdvanceOneTimeStep 8ms 0.19% 83.66% 26ms 0.61% AbstractCardiacCell::GetVoltage (partial-inline) 9ms 0.21% 83.87% 26ms 0.61% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 26ms 0.61% 84.48% 26ms 0.61% daxpy_ 5ms 0.12% 84.59% 25ms 0.58% PetscOptionsFindPair 0 0% 84.59% 25ms 0.58% orte_init 13ms 0.3% 84.90% 24ms 0.56% std::__cxx11::basic_string::basic_string 7ms 0.16% 85.06% 22ms 0.51% PetscFreeAlign 1ms 0.023% 85.08% 22ms 0.51% VecCopy_Seq (partial-inline) 5ms 0.12% 85.20% 22ms 0.51% __GI___libc_malloc 22ms 0.51% 85.71% 22ms 0.51% std::isinf (inline)