File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12715ms, 84.56% of 15036ms total Dropped 756 nodes (cum <= 75.18ms) flat flat% sum% cum cum% 0 0% 0% 15026ms 99.93% __libc_start_call_main 0 0% 0% 15026ms 99.93% __libc_start_main_impl 0 0% 0% 15026ms 99.93% _start 0 0% 0% 15023ms 99.91% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 15023ms 99.91% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 15023ms 99.91% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 15023ms 99.91% main 0 0% 0% 14978ms 99.61% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14978ms 99.61% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14978ms 99.61% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 1ms 0.0067% 0.0067% 14955ms 99.46% AbstractCardiacProblem::Solve 3ms 0.02% 0.027% 11385ms 75.72% AbstractDynamicLinearPdeSolver::Solve 105ms 0.7% 0.72% 9062ms 60.27% AbstractCardiacTissue::SolveCellSystems 71ms 0.47% 1.20% 5466ms 36.35% AbstractCardiacCell::ComputeExceptVoltage 97ms 0.65% 1.84% 4828ms 32.11% AbstractOneStepIvpOdeSolver::InternalSolve 167ms 1.11% 2.95% 4165ms 27.70% EulerIvpOdeSolver::CalculateNextYValue 922ms 6.13% 9.08% 3954ms 26.30% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1796ms 11.94% 21.03% 3506ms 23.32% __GI___exp 1ms 0.0067% 21.04% 3503ms 23.30% MonodomainProblem::WriteOneStep 2ms 0.013% 21.05% 3327ms 22.13% H5Dwrite 1ms 0.0067% 21.06% 3317ms 22.06% Hdf5DataWriter::PutVector 4ms 0.027% 21.08% 3297ms 21.93% H5D__write 92ms 0.61% 21.69% 2798ms 18.61% AbstractCardiacTissue::UpdateCaches (inline) 839ms 5.58% 27.27% 2631ms 17.50% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.0067% 27.28% 1913ms 12.72% H5D__chunk_collective_write 23ms 0.15% 27.43% 1912ms 12.72% H5F_set_coll_metadata_reads 18ms 0.12% 27.55% 1722ms 11.45% H5FD_s3comms_uriencode 1319ms 8.77% 36.33% 1631ms 10.85% __ieee754_exp_fma 3ms 0.02% 36.35% 1553ms 10.33% LinearSystem::Solve 0 0% 36.35% 1433ms 9.53% KSPSolve 0 0% 36.35% 1433ms 9.53% KSPSolve_Private 1ms 0.0067% 36.35% 1416ms 9.42% KSPSolve_CG 50ms 0.33% 36.69% 1340ms 8.91% 2ms 0.013% 36.70% 1339ms 8.91% H5F_block_write 4ms 0.027% 36.73% 1337ms 8.89% H5PB_write 1ms 0.0067% 36.73% 1333ms 8.87% H5F__accum_write 1ms 0.0067% 36.74% 1332ms 8.86% H5FD_write 11ms 0.073% 36.81% 1250ms 8.31% H5D__chunk_cacheable 1ms 0.0067% 36.82% 1229ms 8.17% H5D__mpio_select_write 1ms 0.0067% 36.82% 1119ms 7.44% PMPI_File_write_at_all 1090ms 7.25% 44.07% 1091ms 7.26% __GI_pwritev64 365ms 2.43% 46.50% 1057ms 7.03% H5S_select_iterate 1ms 0.0067% 46.51% 1007ms 6.70% std::pow (inline) 94ms 0.63% 47.13% 1006ms 6.69% __pow 96ms 0.64% 47.77% 911ms 6.06% __ieee754_pow_fma 1ms 0.0067% 47.78% 760ms 5.05% PCApply 1ms 0.0067% 47.79% 754ms 5.01% PCApply_BJacobi_Singleblock 334ms 2.22% 50.01% 748ms 4.97% MonodomainSolver::SetupLinearSystem 1ms 0.0067% 50.01% 725ms 4.82% KSPSolve_PREONLY 1ms 0.0067% 50.02% 722ms 4.80% PCApply_ICC 2ms 0.013% 50.03% 721ms 4.80% MatSolve 708ms 4.71% 54.74% 719ms 4.78% MatSolve_SeqSBAIJ_1_NaturalOrdering 54ms 0.36% 55.10% 709ms 4.72% H5D__chunk_set_sizes 4ms 0.027% 55.13% 570ms 3.79% MatMult 563ms 3.74% 58.87% 566ms 3.76% MatMult_SeqAIJ 2ms 0.013% 58.89% 513ms 3.41% KSP_PCApply.lto_priv.7 75ms 0.5% 59.38% 496ms 3.30% H5S_mpio_space_type 314ms 2.09% 61.47% 484ms 3.22% CellLuoRudy1991FromCellML::VerifyStateVariables 456ms 3.03% 64.51% 456ms 3.03% log_inline (inline) 314ms 2.09% 66.59% 328ms 2.18% exp_inline (inline) 2ms 0.013% 66.61% 326ms 2.17% KSPConvergedDefault 117ms 0.78% 67.38% 266ms 1.77% TimeStepper::TimeStepper 201ms 1.34% 68.72% 256ms 1.70% top12 (inline) 0 0% 68.72% 250ms 1.66% KSP_PCApply 242ms 1.61% 70.33% 242ms 1.61% [libchaste_heart.so] 47ms 0.31% 70.64% 232ms 1.54% __GI___libc_malloc 10ms 0.067% 70.71% 224ms 1.49% H5VM_chunk_index 163ms 1.08% 71.79% 209ms 1.39% _int_malloc 188ms 1.25% 73.04% 188ms 1.25% ddot_ 3ms 0.02% 73.06% 185ms 1.23% Hdf5DataWriter::PutUnlimitedVariable 50ms 0.33% 73.40% 184ms 1.22% AbstractCardiacCell::SetVoltage (partial-inline) 9ms 0.06% 73.46% 176ms 1.17% ompi_datatype_create 31ms 0.21% 73.66% 169ms 1.12% __GI___libc_free 156ms 1.04% 74.70% 156ms 1.04% asuint64 (inline) 31ms 0.21% 74.91% 152ms 1.01% H5S_set_version 9ms 0.06% 74.97% 151ms 1.00% ompi_datatype_destroy 73ms 0.49% 75.45% 149ms 0.99% H5S_hyper_add_span_element 104ms 0.69% 76.14% 147ms 0.98% AbstractOneStepIvpOdeSolver::Solve 6ms 0.04% 76.18% 146ms 0.97% MPI_Type_free 142ms 0.94% 77.13% 142ms 0.94% TimeStepper::CalculateNextTime 56ms 0.37% 77.50% 137ms 0.91% _int_free 61ms 0.41% 77.91% 132ms 0.88% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.02% 77.93% 132ms 0.88% ompi_info_register_framework_params 28ms 0.19% 78.11% 131ms 0.87% ompi_datatype_release_args 4ms 0.027% 78.14% 130ms 0.86% PMPI_File_set_view 2ms 0.013% 78.15% 128ms 0.85% VecNorm 110ms 0.73% 78.88% 127ms 0.84% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 124ms 0.82% 79.71% 124ms 0.82% __memcpy_avx_unaligned_erms 1ms 0.0067% 79.72% 122ms 0.81% VecNorm_Seq 38ms 0.25% 79.97% 121ms 0.8% H5VM_array_calc 117ms 0.78% 80.75% 117ms 0.78% __ieee754_log_fma 77ms 0.51% 81.26% 116ms 0.77% AbstractParameterisedSystem::GetAnyVariable 93ms 0.62% 81.88% 114ms 0.76% AbstractParameterisedSystem::SetAnyVariable 108ms 0.72% 82.60% 108ms 0.72% H5VM_array_offset_pre 108ms 0.72% 83.31% 108ms 0.72% H5VM_chunk_index_scaled 0 0% 83.31% 100ms 0.67% VecDuplicate 9ms 0.06% 83.37% 100ms 0.67% VecDuplicate_MPI 0 0% 83.37% 100ms 0.67% VecTDot 0 0% 83.37% 100ms 0.67% VecTDot_Seq 0 0% 83.37% 100ms 0.67% VecXDot_Seq_Private.constprop.0 3ms 0.02% 83.39% 99ms 0.66% PMPI_Type_create_resized 30ms 0.2% 83.59% 98ms 0.65% AbstractCardiacCell::GetVoltage (partial-inline) 3ms 0.02% 83.61% 96ms 0.64% H5D__chunk_allocated 4ms 0.027% 83.64% 91ms 0.61% MPI_Type_contiguous 1ms 0.0067% 83.65% 90ms 0.6% H5D__select_write 7ms 0.047% 83.69% 89ms 0.59% H5Dgather 3ms 0.02% 83.71% 89ms 0.59% ompi_datatype_duplicate 22ms 0.15% 83.86% 83ms 0.55% ompi_datatype_set_args 1ms 0.0067% 83.87% 82ms 0.55% H5D__contig_fill 19ms 0.13% 83.99% 81ms 0.54% H5S__hyper_rebuild 2ms 0.013% 84.01% 81ms 0.54% H5VM_opvv 81ms 0.54% 84.54% 81ms 0.54% [libm.so.6] 0 0% 84.54% 79ms 0.53% H5D__contig_write 2ms 0.013% 84.56% 77ms 0.51% opal_datatype_create_desc 1ms 0.0067% 84.56% 76ms 0.51% std::vector::_M_assign_aux (inline) 0 0% 84.56% 76ms 0.51% std::vector::assign (inline)