File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3593ms, 85.81% of 4187ms total Dropped 451 nodes (cum <= 20.93ms) flat flat% sum% cum cum% 0 0% 0% 4179ms 99.81% __libc_start_call_main 0 0% 0% 4179ms 99.81% __libc_start_main_impl 0 0% 0% 4179ms 99.81% _start 0 0% 0% 4176ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4176ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4176ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4176ms 99.74% main 0 0% 0% 4142ms 98.93% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4142ms 98.93% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4142ms 98.93% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4134ms 98.73% AbstractCardiacProblem::Solve 3ms 0.072% 0.096% 4120ms 98.40% AbstractDynamicLinearPdeSolver::Solve 9ms 0.21% 0.31% 2183ms 52.14% AbstractCardiacTissue::SolveCellSystems 0 0% 0.31% 1635ms 39.05% LinearSystem::Solve 0 0% 0.31% 1591ms 38.00% KSPSolve 4ms 0.096% 0.41% 1591ms 38.00% KSPSolve_Private 6ms 0.14% 0.55% 1533ms 36.61% KSPSolve_SYMMLQ 32ms 0.76% 1.31% 1248ms 29.81% AbstractCardiacCell::ComputeExceptVoltage 29ms 0.69% 2.01% 1058ms 25.27% AbstractOneStepIvpOdeSolver::InternalSolve 4ms 0.096% 2.10% 968ms 23.12% PCApply 1ms 0.024% 2.13% 954ms 22.78% PCApply_BJacobi_Singleblock 57ms 1.36% 3.49% 884ms 21.11% EulerIvpOdeSolver::CalculateNextYValue 230ms 5.49% 8.98% 814ms 19.44% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 8.98% 806ms 19.25% KSPSolve_PREONLY (partial-inline) 3ms 0.072% 9.05% 765ms 18.27% MatSolve 0 0% 9.05% 765ms 18.27% PCApply_ICC 749ms 17.89% 26.94% 755ms 18.03% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 358ms 8.55% 35.49% 746ms 17.82% __GI___exp 1ms 0.024% 35.51% 726ms 17.34% KSP_PCApply.lto_priv.18 32ms 0.76% 36.28% 723ms 17.27% AbstractCardiacTissue::UpdateCaches (inline) 239ms 5.71% 41.99% 665ms 15.88% CellLuoRudy1991FromCellML::GetIIonic 4ms 0.096% 42.08% 417ms 9.96% MatMult 6ms 0.14% 42.23% 402ms 9.60% MatMult_SeqAIJ 394ms 9.41% 51.64% 400ms 9.55% MatMult_SeqAIJ_Inode (inline) 348ms 8.31% 59.95% 371ms 8.86% __ieee754_exp_fma 2ms 0.048% 60.00% 331ms 7.91% KSPConvergedDefault 0 0% 60.00% 314ms 7.50% KSP_PCApply (partial-inline) 51ms 1.22% 61.21% 241ms 5.76% BidomainSolver::SetupLinearSystem 2ms 0.048% 61.26% 209ms 4.99% std::pow (inline) 16ms 0.38% 61.64% 207ms 4.94% __pow 20ms 0.48% 62.12% 191ms 4.56% __ieee754_pow_fma 68ms 1.62% 63.74% 153ms 3.65% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 63.77% 125ms 2.99% MatNullSpaceRemove 1ms 0.024% 63.79% 103ms 2.46% VecDuplicate 0 0% 63.79% 87ms 2.08% VecMDot 10ms 0.24% 64.03% 87ms 2.08% VecMXDot_Private 85ms 2.03% 66.06% 85ms 2.03% log_inline (inline) 24ms 0.57% 66.63% 77ms 1.84% MPI_Wtime 76ms 1.82% 68.45% 76ms 1.82% exp_inline (inline) 71ms 1.70% 70.15% 71ms 1.70% ddot_ 34ms 0.81% 70.96% 66ms 1.58% TimeStepper::TimeStepper 1ms 0.024% 70.98% 61ms 1.46% VecDot 7ms 0.17% 71.15% 60ms 1.43% PetscLogEventEndDefault 1ms 0.024% 71.17% 60ms 1.43% VecDestroy 58ms 1.39% 72.56% 60ms 1.43% VecMDot_Seq 1ms 0.024% 72.58% 55ms 1.31% VecDuplicate_MPI 3ms 0.072% 72.65% 53ms 1.27% __GI___clock_gettime 12ms 0.29% 72.94% 52ms 1.24% AbstractCardiacCell::SetVoltage (partial-inline) 30ms 0.72% 73.66% 52ms 1.24% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 12ms 0.29% 73.94% 52ms 1.24% PetscLogEventBeginDefault 5ms 0.12% 74.06% 52ms 1.24% VecCopy 2ms 0.048% 74.11% 51ms 1.22% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 74.11% 51ms 1.22% VecDot_Seq 0 0% 74.11% 51ms 1.22% VecXDot_Seq_Private.constprop.0 50ms 1.19% 75.30% 50ms 1.19% [[vdso]] 13ms 0.31% 75.61% 49ms 1.17% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.024% 75.64% 47ms 1.12% VecDuplicate_Seq 0 0% 75.64% 46ms 1.10% KSP_RemoveNullSpace (inline) 4ms 0.096% 75.73% 44ms 1.05% PetscMallocA 37ms 0.88% 76.62% 41ms 0.98% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 3ms 0.072% 76.69% 41ms 0.98% VecAXPY 1ms 0.024% 76.71% 40ms 0.96% PetscMallocAlign (partial-inline) 2ms 0.048% 76.76% 39ms 0.93% VecNorm 39ms 0.93% 77.69% 39ms 0.93% __ieee754_log_fma 39ms 0.93% 78.62% 39ms 0.93% std::isinf (inline) 3ms 0.072% 78.70% 37ms 0.88% VecCreate 2ms 0.048% 78.74% 37ms 0.88% VecMAXPY 37ms 0.88% 79.63% 37ms 0.88% [libchaste_heart.so] 1ms 0.024% 79.65% 36ms 0.86% VecNorm_Seq 5ms 0.12% 79.77% 35ms 0.84% VecCreate_MPI_Private 34ms 0.81% 80.58% 34ms 0.81% TimeStepper::CalculateNextTime 28ms 0.67% 81.25% 33ms 0.79% AbstractOneStepIvpOdeSolver::Solve 0 0% 81.25% 33ms 0.79% PetscMemcpy (inline) 33ms 0.79% 82.04% 33ms 0.79% __memcpy_avx_unaligned_erms 30ms 0.72% 82.76% 31ms 0.74% AbstractParameterisedSystem::SetAnyVariable 14ms 0.33% 83.09% 31ms 0.74% top12 (inline) 0 0% 83.09% 30ms 0.72% CxxTest::RealWorldDescription::setUp 0 0% 83.09% 30ms 0.72% PMPI_Init_thread 0 0% 83.09% 30ms 0.72% PetscInitialize 0 0% 83.09% 30ms 0.72% PetscSetup::setUpWorld 0 0% 83.09% 30ms 0.72% PetscSetupUtils::CommonSetup 0 0% 83.09% 30ms 0.72% PetscSetupUtils::InitialisePetsc 0 0% 83.09% 30ms 0.72% ompi_mpi_init 28ms 0.67% 83.76% 28ms 0.67% DistributedVector::Iterator::operator!= 3ms 0.072% 83.83% 28ms 0.67% PetscHeaderDestroy_Private 2ms 0.048% 83.88% 28ms 0.67% VecAXPY_Seq 0 0% 83.88% 26ms 0.62% VecNorm_MPI 0 0% 83.88% 26ms 0.62% VecNorm_MPI_Default.constprop.0 8ms 0.19% 84.07% 26ms 0.62% std::__cxx11::basic_string::basic_string 2ms 0.048% 84.12% 25ms 0.6% 0 0% 84.12% 25ms 0.6% PetscMemzero (inline) 24ms 0.57% 84.69% 25ms 0.6% VecMAXPY_Seq 2ms 0.048% 84.74% 25ms 0.6% VecSetType 7ms 0.17% 84.91% 25ms 0.6% __GI___libc_malloc 0 0% 84.91% 24ms 0.57% VecCopy_Seq (partial-inline) 24ms 0.57% 85.48% 24ms 0.57% __memset_avx2_unaligned_erms 12ms 0.29% 85.77% 23ms 0.55% TimeStepper::AdvanceOneTimeStep 2ms 0.048% 85.81% 22ms 0.53% __posix_memalign