File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3558ms, 86.70% of 4104ms total Dropped 482 nodes (cum <= 20.52ms) flat flat% sum% cum cum% 0 0% 0% 4096ms 99.81% __libc_start_call_main 0 0% 0% 4096ms 99.81% __libc_start_main_impl 0 0% 0% 4096ms 99.81% _start 0 0% 0% 4093ms 99.73% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4093ms 99.73% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4093ms 99.73% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4093ms 99.73% main 0 0% 0% 4053ms 98.76% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4053ms 98.76% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4053ms 98.76% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 0 0% 0% 4045ms 98.56% AbstractCardiacProblem::Solve 1ms 0.024% 0.024% 4028ms 98.15% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.024% 2092ms 50.97% LinearSystem::Solve 0 0% 0.024% 2045ms 49.83% KSPSolve 7ms 0.17% 0.19% 2045ms 49.83% KSPSolve_Private 1ms 0.024% 0.22% 1992ms 48.54% KSPSolve_CG 5ms 0.12% 0.34% 1664ms 40.55% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.37% 1331ms 32.43% PCApply 0 0% 0.37% 1316ms 32.07% PCApply_BJacobi_Singleblock 0 0% 0.37% 1147ms 27.95% KSPSolve_PREONLY (partial-inline) 5ms 0.12% 0.49% 1087ms 26.49% MatSolve 0 0% 0.49% 1087ms 26.49% PCApply_ICC 1072ms 26.12% 26.61% 1079ms 26.29% MatSolve_SeqSBAIJ_1_NaturalOrdering 58ms 1.41% 28.02% 1067ms 26.00% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 28.02% 1030ms 25.10% KSP_PCApply.lto_priv.7 234ms 5.70% 33.72% 948ms 23.10% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 15ms 0.37% 34.09% 559ms 13.62% AbstractCardiacTissue::UpdateCaches (inline) 171ms 4.17% 38.26% 526ms 12.82% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 3ms 0.073% 38.33% 505ms 12.31% MatMult 2ms 0.049% 38.38% 494ms 12.04% MatMult_SeqAIJ 484ms 11.79% 50.17% 494ms 12.04% MatMult_SeqAIJ_Inode (inline) 0 0% 50.17% 393ms 9.58% KSPConvergedDefault 51ms 1.24% 51.41% 388ms 9.45% CardiacNewtonSolver::Solve 0 0% 51.41% 388ms 9.45% KSP_PCApply (partial-inline) 33ms 0.8% 52.22% 235ms 5.73% BidomainSolver::SetupLinearSystem 31ms 0.76% 52.97% 233ms 5.68% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 34ms 0.83% 53.80% 230ms 5.60% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 116ms 2.83% 56.63% 223ms 5.43% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 0 0% 56.63% 201ms 4.90% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 40ms 0.97% 57.60% 201ms 4.90% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 185ms 4.51% 62.11% 185ms 4.51% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 1ms 0.024% 62.13% 152ms 3.70% MatNullSpaceRemove 4ms 0.097% 62.23% 147ms 3.58% std::pow (inline) 17ms 0.41% 62.65% 142ms 3.46% __pow 71ms 1.73% 64.38% 137ms 3.34% __GI___exp 126ms 3.07% 67.45% 130ms 3.17% __ieee754_log_fma 26ms 0.63% 68.08% 125ms 3.05% __ieee754_pow_fma 122ms 2.97% 71.05% 122ms 2.97% ddot_ 0 0% 71.05% 111ms 2.70% VecDuplicate 0 0% 71.05% 102ms 2.49% boost::numeric::ublas::norm_inf (inline) 63ms 1.54% 72.59% 102ms 2.49% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.59% 102ms 2.49% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.59% 102ms 2.49% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 0 0% 72.59% 92ms 2.24% VecMDot 5ms 0.12% 72.71% 92ms 2.24% VecMXDot_Private 2ms 0.049% 72.76% 90ms 2.19% VecTDot 15ms 0.37% 73.12% 82ms 2.00% MPI_Wtime 1ms 0.024% 73.15% 80ms 1.95% VecNorm 0 0% 73.15% 75ms 1.83% VecTDot_Seq 0 0% 73.15% 75ms 1.83% VecXDot_Seq_Private.constprop.0 1ms 0.024% 73.17% 67ms 1.63% __GI___clock_gettime 66ms 1.61% 74.78% 66ms 1.61% [[vdso]] 63ms 1.54% 76.32% 65ms 1.58% VecMDot_Seq 12ms 0.29% 76.61% 64ms 1.56% PetscLogEventEndDefault 62ms 1.51% 78.12% 63ms 1.54% exp_inline (inline) 60ms 1.46% 79.58% 62ms 1.51% __ieee754_exp_fma 1ms 0.024% 79.61% 61ms 1.49% VecDuplicate_MPI 32ms 0.78% 80.38% 59ms 1.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 9ms 0.22% 80.60% 59ms 1.44% PetscMallocA 3ms 0.073% 80.68% 59ms 1.44% VecMAXPY 2ms 0.049% 80.73% 59ms 1.44% VecNorm_Seq 0 0% 80.73% 58ms 1.41% VecDestroy 5ms 0.12% 80.85% 50ms 1.22% PetscLogEventBeginDefault 3ms 0.073% 80.92% 50ms 1.22% PetscMallocAlign (partial-inline) 1ms 0.024% 80.95% 50ms 1.22% VecDuplicate_Seq 48ms 1.17% 82.12% 48ms 1.17% [libchaste_heart.so] 2ms 0.049% 82.16% 47ms 1.15% VecCreate 38ms 0.93% 83.09% 41ms 1% VecMAXPY_Seq 4ms 0.097% 83.19% 38ms 0.93% VecCreate_MPI_Private 0 0% 83.19% 37ms 0.9% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 83.19% 37ms 0.9% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 83.19% 37ms 0.9% boost_numeric_ublas_abs (inline) 37ms 0.9% 84.09% 37ms 0.9% std::abs (inline) 0 0% 84.09% 35ms 0.85% CxxTest::RealWorldDescription::setUp 0 0% 84.09% 35ms 0.85% PetscSetup::setUpWorld 0 0% 84.09% 35ms 0.85% PetscSetupUtils::CommonSetup 0 0% 84.09% 34ms 0.83% PetscInitialize 0 0% 84.09% 34ms 0.83% PetscSetupUtils::InitialisePetsc 34ms 0.83% 84.92% 34ms 0.83% log_inline (inline) 33ms 0.8% 85.72% 33ms 0.8% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.72% 33ms 0.8% PMPI_Init_thread 0 0% 85.72% 33ms 0.8% ompi_mpi_init 6ms 0.15% 85.87% 31ms 0.76% VecCopy 6ms 0.15% 86.01% 30ms 0.73% __posix_memalign 11ms 0.27% 86.28% 29ms 0.71% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 86.28% 29ms 0.71% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.024% 86.31% 28ms 0.68% 5ms 0.12% 86.43% 25ms 0.61% __GI___libc_malloc 4ms 0.097% 86.53% 24ms 0.58% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 4ms 0.097% 86.62% 24ms 0.58% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#3}::operator() (inline) 3ms 0.073% 86.70% 24ms 0.58% VecSetType 0 0% 86.70% 23ms 0.56% orte_init 0 0% 86.70% 21ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 86.70% 21ms 0.51% PetscMemzero (inline)