File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3705ms, 87.57% of 4231ms total Dropped 488 nodes (cum <= 21.16ms) flat flat% sum% cum cum% 0 0% 0% 4224ms 99.83% __libc_start_call_main 0 0% 0% 4224ms 99.83% __libc_start_main_impl 0 0% 0% 4224ms 99.83% _start 0 0% 0% 4221ms 99.76% main 0 0% 0% 4220ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4220ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4220ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4179ms 98.77% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4179ms 98.77% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4179ms 98.77% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4170ms 98.56% AbstractCardiacProblem::Solve 2ms 0.047% 0.095% 4150ms 98.09% AbstractDynamicLinearPdeSolver::Solve 10ms 0.24% 0.33% 2313ms 54.67% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.35% 1548ms 36.59% LinearSystem::Solve 0 0% 0.35% 1491ms 35.24% KSPSolve 4ms 0.095% 0.45% 1491ms 35.24% KSPSolve_Private 1ms 0.024% 0.47% 1436ms 33.94% KSPSolve_SYMMLQ 32ms 0.76% 1.23% 1355ms 32.03% AbstractCardiacCell::ComputeExceptVoltage 20ms 0.47% 1.70% 1147ms 27.11% AbstractOneStepIvpOdeSolver::InternalSolve 75ms 1.77% 3.47% 984ms 23.26% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.047% 3.52% 955ms 22.57% PCApply 4ms 0.095% 3.62% 950ms 22.45% PCApply_BJacobi_Singleblock 246ms 5.81% 9.43% 895ms 21.15% CellLuoRudy1991FromCellML::EvaluateYDerivatives 394ms 9.31% 18.74% 838ms 19.81% __GI___exp 0 0% 18.74% 792ms 18.72% KSPSolve_PREONLY (partial-inline) 22ms 0.52% 19.26% 759ms 17.94% AbstractCardiacTissue::UpdateCaches (inline) 3ms 0.071% 19.33% 741ms 17.51% MatSolve 0 0% 19.33% 741ms 17.51% PCApply_ICC 727ms 17.18% 36.52% 731ms 17.28% MatSolve_SeqSBAIJ_1_NaturalOrdering 241ms 5.70% 42.21% 714ms 16.88% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 42.24% 701ms 16.57% KSP_PCApply.lto_priv.18 393ms 9.29% 51.52% 424ms 10.02% __ieee754_exp_fma 7ms 0.17% 51.69% 380ms 8.98% MatMult 5ms 0.12% 51.81% 370ms 8.74% MatMult_SeqAIJ (partial-inline) 362ms 8.56% 60.36% 370ms 8.74% MatMult_SeqAIJ_Inode (inline) 2ms 0.047% 60.41% 343ms 8.11% KSPConvergedDefault 0 0% 60.41% 328ms 7.75% KSP_PCApply (partial-inline) 41ms 0.97% 61.38% 240ms 5.67% BidomainSolver::SetupLinearSystem 1ms 0.024% 61.40% 227ms 5.37% std::pow (inline) 19ms 0.45% 61.85% 226ms 5.34% __pow 29ms 0.69% 62.54% 205ms 4.85% __ieee754_pow_fma 68ms 1.61% 64.15% 147ms 3.47% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 64.15% 127ms 3.00% MatNullSpaceRemove 0 0% 64.15% 114ms 2.69% VecDuplicate 97ms 2.29% 66.44% 97ms 2.29% log_inline (inline) 22ms 0.52% 66.96% 88ms 2.08% MPI_Wtime 73ms 1.73% 68.68% 75ms 1.77% exp_inline (inline) 0 0% 68.68% 71ms 1.68% VecMDot 4ms 0.095% 68.78% 71ms 1.68% VecMXDot_Private 2ms 0.047% 68.83% 66ms 1.56% __GI___clock_gettime 64ms 1.51% 70.34% 64ms 1.51% [[vdso]] 2ms 0.047% 70.39% 60ms 1.42% VecDuplicate_MPI 59ms 1.39% 71.78% 59ms 1.39% ddot_ 8ms 0.19% 71.97% 58ms 1.37% PetscLogEventBeginDefault 12ms 0.28% 72.25% 58ms 1.37% PetscLogEventEndDefault 33ms 0.78% 73.03% 58ms 1.37% TimeStepper::TimeStepper 7ms 0.17% 73.20% 56ms 1.32% VecMAXPY 0 0% 73.20% 54ms 1.28% VecDuplicate_Seq 49ms 1.16% 74.36% 51ms 1.21% VecMDot_Seq 29ms 0.69% 75.04% 50ms 1.18% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.071% 75.11% 50ms 1.18% VecNorm 7ms 0.17% 75.28% 48ms 1.13% PetscMallocA 11ms 0.26% 75.54% 47ms 1.11% AbstractCardiacCell::SetVoltage (partial-inline) 3ms 0.071% 75.61% 47ms 1.11% VecCopy 35ms 0.83% 76.44% 42ms 0.99% AbstractOneStepIvpOdeSolver::Solve 1ms 0.024% 76.46% 42ms 0.99% VecCreate 1ms 0.024% 76.48% 42ms 0.99% VecDestroy 1ms 0.024% 76.51% 41ms 0.97% AbstractBidomainSolver::FinaliseLinearSystem 3ms 0.071% 76.58% 41ms 0.97% PetscMallocAlign (partial-inline) 41ms 0.97% 77.55% 41ms 0.97% TimeStepper::CalculateNextTime 12ms 0.28% 77.83% 40ms 0.95% AbstractBidomainSolver::CheckCompatibilityCondition 34ms 0.8% 78.63% 40ms 0.95% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 4ms 0.095% 78.73% 39ms 0.92% VecAXPY 2ms 0.047% 78.78% 39ms 0.92% VecDot 3ms 0.071% 78.85% 38ms 0.9% VecCreate_MPI_Private 1ms 0.024% 78.87% 38ms 0.9% VecNorm_Seq 0 0% 78.87% 36ms 0.85% CxxTest::RealWorldDescription::setUp 0 0% 78.87% 36ms 0.85% PetscSetup::setUpWorld 0 0% 78.87% 36ms 0.85% PetscSetupUtils::CommonSetup 36ms 0.85% 79.72% 36ms 0.85% __ieee754_log_fma 0 0% 79.72% 35ms 0.83% PMPI_Init_thread 0 0% 79.72% 35ms 0.83% PetscInitialize 0 0% 79.72% 35ms 0.83% PetscSetupUtils::InitialisePetsc 0 0% 79.72% 35ms 0.83% ompi_mpi_init 34ms 0.8% 80.52% 34ms 0.8% [libchaste_heart.so] 12ms 0.28% 80.81% 33ms 0.78% std::__cxx11::basic_string::basic_string 31ms 0.73% 81.54% 32ms 0.76% AbstractParameterisedSystem::SetAnyVariable 11ms 0.26% 81.80% 32ms 0.76% TimeStepper::AdvanceOneTimeStep 0 0% 81.80% 32ms 0.76% VecDot_Seq 0 0% 81.80% 32ms 0.76% VecXDot_Seq_Private.constprop.0 32ms 0.76% 82.56% 32ms 0.76% std::isinf (inline) 0 0% 82.56% 31ms 0.73% PetscMemcpy (inline) 30ms 0.71% 83.27% 31ms 0.73% VecMAXPY_Seq 31ms 0.73% 84.00% 31ms 0.73% __memcpy_avx_unaligned_erms 13ms 0.31% 84.31% 30ms 0.71% top12 (inline) 0 0% 84.31% 29ms 0.69% 2ms 0.047% 84.35% 29ms 0.69% VecSetType 0 0% 84.35% 28ms 0.66% VecNorm_MPI 1ms 0.024% 84.38% 28ms 0.66% VecNorm_MPI_Default.constprop.0 23ms 0.54% 84.92% 25ms 0.59% AbstractParameterisedSystem::GetAnyVariable 1ms 0.024% 84.94% 25ms 0.59% VecAXPY_Seq 0 0% 84.94% 25ms 0.59% VecCopy_Seq (partial-inline) 24ms 0.57% 85.51% 24ms 0.57% asuint64 (inline) 0 0% 85.51% 24ms 0.57% orte_init 23ms 0.54% 86.06% 23ms 0.54% DistributedVector::Iterator::operator!= 4ms 0.095% 86.15% 23ms 0.54% VecStashCreate_Private 23ms 0.54% 86.69% 23ms 0.54% daxpy_ 10ms 0.24% 86.93% 22ms 0.52% AbstractCardiacCell::GetVoltage (partial-inline) 5ms 0.12% 87.05% 22ms 0.52% PetscHeaderDestroy_Private 0 0% 87.05% 22ms 0.52% PetscMemzero (inline) 22ms 0.52% 87.57% 22ms 0.52% [libm.so.6]