File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 112922ms, 91.89% of 122886ms total Dropped 1167 nodes (cum <= 614.43ms) flat flat% sum% cum cum% 0 0% 0% 122869ms 100% __libc_start_call_main 0 0% 0% 122869ms 100% __libc_start_main_impl 0 0% 0% 122869ms 100% _start 0 0% 0% 122867ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 122867ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 122867ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 122867ms 100% main 0 0% 0% 122830ms 100% AbstractConvergenceTester::Converge 0 0% 0% 122830ms 100% CxxTest::RealTestDescription::run 0 0% 0% 122830ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 122830ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 122830ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 122830ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0024% 0.0024% 121535ms 98.90% AbstractCardiacProblem::Solve 13ms 0.011% 0.013% 120647ms 98.18% AbstractDynamicLinearPdeSolver::Solve 10ms 0.0081% 0.021% 68604ms 55.83% LinearSystem::Solve 2ms 0.0016% 0.023% 67993ms 55.33% KSPSolve 17ms 0.014% 0.037% 67991ms 55.33% KSPSolve_Private 14ms 0.011% 0.048% 67517ms 54.94% KSPSolve_SYMMLQ 174ms 0.14% 0.19% 42989ms 34.98% AbstractCardiacTissue::SolveCellSystems 6ms 0.0049% 0.19% 38188ms 31.08% PCApply 7ms 0.0057% 0.2% 38171ms 31.06% PCApply_BJacobi_Singleblock 1ms 0.00081% 0.2% 35175ms 28.62% KSPSolve_PREONLY (partial-inline) 3ms 0.0024% 0.2% 33928ms 27.61% PCApply_ICC 7ms 0.0057% 0.21% 33925ms 27.61% MatSolve 33484ms 27.25% 27.46% 33918ms 27.60% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1390ms 1.13% 28.59% 32993ms 26.85% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0024% 28.59% 32955ms 26.82% KSP_PCApply.lto_priv.18 7057ms 5.74% 34.33% 28510ms 23.20% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0057% 34.34% 23110ms 18.81% MatMult 474ms 0.39% 34.72% 23103ms 18.80% MatMult_SeqAIJ (partial-inline) 22425ms 18.25% 52.97% 22916ms 18.65% MatMult_SeqAIJ_Inode (inline) 2023ms 1.65% 54.62% 14742ms 12.00% CardiacNewtonSolver::Solve 272ms 0.22% 54.84% 9174ms 7.47% AbstractCardiacTissue::UpdateCaches (inline) 1966ms 1.60% 56.44% 8690ms 7.07% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4402ms 3.58% 60.02% 8594ms 6.99% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1071ms 0.87% 60.89% 8028ms 6.53% BidomainSolver::SetupLinearSystem 1207ms 0.98% 61.88% 7419ms 6.04% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00081% 61.88% 7304ms 5.94% KSP_PCApply (partial-inline) 8ms 0.0065% 61.88% 6658ms 5.42% KSPConvergedDefault 5907ms 4.81% 66.69% 5907ms 4.81% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3887ms 3.16% 69.85% 3922ms 3.19% __ieee754_log_fma 0 0% 69.85% 3724ms 3.03% boost::numeric::ublas::norm_inf (inline) 2545ms 2.07% 71.93% 3724ms 3.03% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.93% 3724ms 3.03% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.93% 3724ms 3.03% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 6ms 0.0049% 71.93% 3467ms 2.82% MatNullSpaceRemove 3366ms 2.74% 74.67% 3366ms 2.74% __memcpy_avx_unaligned_erms 0 0% 74.67% 3318ms 2.70% PetscMemcpy (inline) 28ms 0.023% 74.69% 3266ms 2.66% std::pow (inline) 376ms 0.31% 75.00% 3233ms 2.63% __pow 28ms 0.023% 75.02% 2937ms 2.39% VecCopy 2ms 0.0016% 75.02% 2909ms 2.37% VecCopy_Seq (partial-inline) 1763ms 1.43% 76.46% 2905ms 2.36% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 363ms 0.3% 76.75% 2853ms 2.32% __ieee754_pow_fma 2849ms 2.32% 79.07% 2849ms 2.32% ddot_ 15ms 0.012% 79.08% 2766ms 2.25% VecAXPY 4ms 0.0033% 79.09% 2751ms 2.24% VecAXPY_Seq 2736ms 2.23% 81.31% 2736ms 2.23% daxpy_ 9ms 0.0073% 81.32% 2385ms 1.94% VecDot 1ms 0.00081% 81.32% 2376ms 1.93% VecDot_Seq 3ms 0.0024% 81.32% 2375ms 1.93% VecXDot_Seq_Private.constprop.0 6ms 0.0049% 81.33% 2142ms 1.74% VecMDot 14ms 0.011% 81.34% 2136ms 1.74% VecMXDot_Private 2107ms 1.71% 83.05% 2119ms 1.72% VecMDot_Seq 3ms 0.0024% 83.06% 2078ms 1.69% AbstractFeVolumeIntegralAssembler::DoAssemble 1644ms 1.34% 84.39% 1716ms 1.40% exp_inline (inline) 34ms 0.028% 84.42% 1711ms 1.39% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1601ms 1.30% 85.72% 1601ms 1.30% __memset_avx2_unaligned_erms 0 0% 85.72% 1594ms 1.30% PetscMemzero (inline) 1423ms 1.16% 86.88% 1423ms 1.16% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.88% 1422ms 1.16% AbstractFeAssemblerInterface::AssembleMatrix (inline) 4ms 0.0033% 86.89% 1319ms 1.07% VecMAXPY 1308ms 1.06% 87.95% 1315ms 1.07% VecMAXPY_Seq 3ms 0.0024% 87.95% 1270ms 1.03% VecDuplicate 0 0% 87.95% 1124ms 0.91% CuboidMeshConstructor::Construct 0 0% 87.95% 1123ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0016% 87.95% 1123ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 12ms 0.0098% 87.96% 1102ms 0.9% PetscMallocA 4ms 0.0033% 87.97% 1090ms 0.89% PetscMallocAlign (partial-inline) 0 0% 87.97% 1082ms 0.88% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.97% 1082ms 0.88% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.97% 1082ms 0.88% boost_numeric_ublas_abs (inline) 1082ms 0.88% 88.85% 1082ms 0.88% std::abs (inline) 828ms 0.67% 89.52% 1081ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 8ms 0.0065% 89.53% 1081ms 0.88% boost::numeric::ublas::matrix_assign (inline) 243ms 0.2% 89.73% 1065ms 0.87% boost::numeric::ublas::indexing_matrix_assign 4ms 0.0033% 89.73% 1043ms 0.85% KSP_RemoveNullSpace (inline) 0 0% 89.73% 1005ms 0.82% Element::Element 3ms 0.0024% 89.73% 1000ms 0.81% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00081% 89.73% 941ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 888ms 0.72% 90.46% 888ms 0.72% [libchaste_heart.so] 8ms 0.0065% 90.46% 859ms 0.7% BidomainAssembler::ComputeMatrixTerm 4ms 0.0033% 90.47% 835ms 0.68% VecDuplicate_Seq 9ms 0.0073% 90.47% 828ms 0.67% boost::numeric::ublas::c_matrix::c_matrix (inline) 1ms 0.00081% 90.47% 814ms 0.66% BidomainProblem::WriteOneStep 9ms 0.0073% 90.48% 803ms 0.65% VecScale 1ms 0.00081% 90.48% 794ms 0.65% VecScale_Seq 791ms 0.64% 91.13% 791ms 0.64% dscal_ 5ms 0.0041% 91.13% 786ms 0.64% VecNorm 1ms 0.00081% 91.13% 769ms 0.63% VecNorm_Seq 5ms 0.0041% 91.13% 755ms 0.61% VecSetType 733ms 0.6% 91.73% 733ms 0.6% log_inline (inline) 2ms 0.0016% 91.73% 727ms 0.59% VecCreate_Seq 1ms 0.00081% 91.73% 666ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 195ms 0.16% 91.89% 663ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.89% 656ms 0.53% AbstractFeAssemblerInterface::Assemble (inline)