File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3707ms, 86.79% of 4271ms total Dropped 474 nodes (cum <= 21.36ms) flat flat% sum% cum cum% 0 0% 0% 4263ms 99.81% __libc_start_call_main 0 0% 0% 4263ms 99.81% __libc_start_main_impl 0 0% 0% 4263ms 99.81% _start 0 0% 0% 4261ms 99.77% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4261ms 99.77% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4261ms 99.77% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4261ms 99.77% main 0 0% 0% 4220ms 98.81% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4220ms 98.81% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4220ms 98.81% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.023% 0.023% 4212ms 98.62% AbstractCardiacProblem::Solve 0 0% 0.023% 4192ms 98.15% AbstractDynamicLinearPdeSolver::Solve 18ms 0.42% 0.44% 2196ms 51.42% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.47% 1670ms 39.10% LinearSystem::Solve 0 0% 0.47% 1624ms 38.02% KSPSolve 4ms 0.094% 0.56% 1624ms 38.02% KSPSolve_Private 0 0% 0.56% 1574ms 36.85% KSPSolve_SYMMLQ 38ms 0.89% 1.45% 1277ms 29.90% AbstractCardiacCell::ComputeExceptVoltage 32ms 0.75% 2.20% 1080ms 25.29% AbstractOneStepIvpOdeSolver::InternalSolve 3ms 0.07% 2.27% 1045ms 24.47% PCApply 4ms 0.094% 2.36% 1037ms 24.28% PCApply_BJacobi_Singleblock 69ms 1.62% 3.98% 900ms 21.07% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.98% 878ms 20.56% KSPSolve_PREONLY (partial-inline) 2ms 0.047% 4.03% 836ms 19.57% PCApply_ICC 2ms 0.047% 4.07% 834ms 19.53% MatSolve 822ms 19.25% 23.32% 826ms 19.34% MatSolve_SeqSBAIJ_1_NaturalOrdering 213ms 4.99% 28.31% 823ms 19.27% CellLuoRudy1991FromCellML::EvaluateYDerivatives 338ms 7.91% 36.22% 780ms 18.26% __GI___exp 0 0% 36.22% 759ms 17.77% KSP_PCApply.lto_priv.18 19ms 0.44% 36.67% 705ms 16.51% AbstractCardiacTissue::UpdateCaches (inline) 205ms 4.80% 41.47% 668ms 15.64% CellLuoRudy1991FromCellML::GetIIonic 391ms 9.15% 50.62% 419ms 9.81% __ieee754_exp_fma 5ms 0.12% 50.74% 409ms 9.58% MatMult 26ms 0.61% 51.35% 400ms 9.37% MatMult_SeqAIJ 370ms 8.66% 60.01% 377ms 8.83% MatMult_SeqAIJ_Inode (inline) 2ms 0.047% 60.06% 372ms 8.71% KSPConvergedDefault 0 0% 60.06% 357ms 8.36% KSP_PCApply (partial-inline) 46ms 1.08% 61.13% 270ms 6.32% BidomainSolver::SetupLinearSystem 23ms 0.54% 61.67% 234ms 5.48% __pow 0 0% 61.67% 234ms 5.48% std::pow (inline) 23ms 0.54% 62.21% 211ms 4.94% __ieee754_pow_fma 66ms 1.55% 63.76% 148ms 3.47% CellLuoRudy1991FromCellML::VerifyStateVariables 6ms 0.14% 63.90% 116ms 2.72% MatNullSpaceRemove 116ms 2.72% 66.61% 116ms 2.72% log_inline (inline) 1ms 0.023% 66.64% 111ms 2.60% VecDuplicate 28ms 0.66% 67.29% 83ms 1.94% MPI_Wtime 72ms 1.69% 68.98% 72ms 1.69% ddot_ 67ms 1.57% 70.55% 68ms 1.59% exp_inline (inline) 1ms 0.023% 70.57% 66ms 1.55% VecMDot 38ms 0.89% 71.46% 65ms 1.52% TimeStepper::TimeStepper 5ms 0.12% 71.58% 65ms 1.52% VecMXDot_Private 12ms 0.28% 71.86% 64ms 1.50% PetscLogEventEndDefault 13ms 0.3% 72.16% 58ms 1.36% PetscLogEventBeginDefault 3ms 0.07% 72.23% 57ms 1.33% VecDuplicate_Seq 6ms 0.14% 72.37% 56ms 1.31% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.023% 72.40% 56ms 1.31% VecNorm 1ms 0.023% 72.42% 55ms 1.29% __GI___clock_gettime 0 0% 72.42% 54ms 1.26% VecCopy 54ms 1.26% 73.68% 54ms 1.26% [[vdso]] 0 0% 73.68% 53ms 1.24% VecDuplicate_MPI 53ms 1.24% 74.92% 53ms 1.24% [libchaste_heart.so] 0 0% 74.92% 50ms 1.17% VecDot 23ms 0.54% 75.46% 48ms 1.12% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 75.46% 48ms 1.12% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 75.46% 47ms 1.10% VecNorm_Seq 0 0% 75.46% 46ms 1.08% VecDot_Seq 1ms 0.023% 75.49% 46ms 1.08% VecXDot_Seq_Private.constprop.0 4ms 0.094% 75.58% 45ms 1.05% PetscMallocA 3ms 0.07% 75.65% 44ms 1.03% VecAXPY 2ms 0.047% 75.70% 44ms 1.03% VecMAXPY 0 0% 75.70% 42ms 0.98% PetscMallocAlign (partial-inline) 3ms 0.07% 75.77% 42ms 0.98% VecCreate 40ms 0.94% 76.70% 40ms 0.94% VecMDot_Seq 15ms 0.35% 77.05% 40ms 0.94% std::__cxx11::basic_string::basic_string 33ms 0.77% 77.83% 39ms 0.91% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 37ms 0.87% 78.69% 39ms 0.91% AbstractParameterisedSystem::SetAnyVariable 0 0% 78.69% 38ms 0.89% VecDestroy 32ms 0.75% 79.44% 37ms 0.87% AbstractOneStepIvpOdeSolver::Solve 0 0% 79.44% 37ms 0.87% CxxTest::RealWorldDescription::setUp 0 0% 79.44% 37ms 0.87% PetscInitialize 0 0% 79.44% 37ms 0.87% PetscSetup::setUpWorld 0 0% 79.44% 37ms 0.87% PetscSetupUtils::CommonSetup 0 0% 79.44% 37ms 0.87% PetscSetupUtils::InitialisePetsc 0 0% 79.44% 36ms 0.84% PMPI_Init_thread 36ms 0.84% 80.29% 36ms 0.84% __memcpy_avx_unaligned_erms 0 0% 80.29% 36ms 0.84% ompi_mpi_init 16ms 0.37% 80.66% 35ms 0.82% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 33ms 0.77% 81.43% 33ms 0.77% __ieee754_log_fma 0 0% 81.43% 32ms 0.75% PetscMemcpy (inline) 1ms 0.023% 81.46% 32ms 0.75% VecCreate_MPI_Private 31ms 0.73% 82.18% 32ms 0.75% VecMAXPY_Seq 32ms 0.75% 82.93% 32ms 0.75% std::isinf (inline) 31ms 0.73% 83.66% 31ms 0.73% TimeStepper::CalculateNextTime 2ms 0.047% 83.70% 31ms 0.73% VecCopy_Seq (partial-inline) 30ms 0.7% 84.41% 30ms 0.7% __memset_avx2_unaligned_erms 2ms 0.047% 84.45% 29ms 0.68% 18ms 0.42% 84.87% 29ms 0.68% top12 (inline) 0 0% 84.87% 28ms 0.66% PetscMemzero (inline) 16ms 0.37% 85.25% 28ms 0.66% TimeStepper::AdvanceOneTimeStep 0 0% 85.25% 28ms 0.66% VecNorm_MPI 0 0% 85.25% 28ms 0.66% VecNorm_MPI_Default.constprop.0 1ms 0.023% 85.27% 27ms 0.63% VecSetType 0 0% 85.27% 26ms 0.61% VecAXPY_Seq 14ms 0.33% 85.60% 25ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 24ms 0.56% 86.16% 24ms 0.56% daxpy_ 0 0% 86.16% 24ms 0.56% orte_init 23ms 0.54% 86.70% 23ms 0.54% [libm.so.6] 4ms 0.094% 86.79% 23ms 0.54% __GI___libc_malloc