File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3787ms, 87.58% of 4324ms total Dropped 481 nodes (cum <= 21.62ms) flat flat% sum% cum cum% 0 0% 0% 4313ms 99.75% __libc_start_call_main 0 0% 0% 4313ms 99.75% __libc_start_main_impl 0 0% 0% 4313ms 99.75% _start 0 0% 0% 4310ms 99.68% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4310ms 99.68% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4310ms 99.68% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4310ms 99.68% main 0 0% 0% 4271ms 98.77% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4271ms 98.77% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4271ms 98.77% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.023% 0.023% 4262ms 98.57% AbstractCardiacProblem::Solve 2ms 0.046% 0.069% 4245ms 98.17% AbstractDynamicLinearPdeSolver::Solve 27ms 0.62% 0.69% 2055ms 47.53% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.72% 1717ms 39.71% LinearSystem::Solve 1ms 0.023% 0.74% 1670ms 38.62% KSPSolve 6ms 0.14% 0.88% 1670ms 38.62% KSPSolve_Private 3ms 0.069% 0.95% 1636ms 37.84% KSPSolve_CG 51ms 1.18% 2.13% 1363ms 31.52% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 265ms 6.13% 8.26% 1218ms 28.17% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 0 0% 8.26% 950ms 21.97% PCApply 1ms 0.023% 8.28% 938ms 21.69% PCApply_BJacobi_Singleblock 0 0% 8.28% 805ms 18.62% KSPSolve_PREONLY (partial-inline) 0 0% 8.28% 751ms 17.37% KSP_PCApply.lto_priv.7 2ms 0.046% 8.33% 751ms 17.37% MatSolve 0 0% 8.33% 751ms 17.37% PCApply_ICC 738ms 17.07% 25.39% 744ms 17.21% MatSolve_SeqSBAIJ_1_NaturalOrdering 3ms 0.069% 25.46% 657ms 15.19% MatMult 11ms 0.25% 25.72% 647ms 14.96% MatMult_SeqAIJ (partial-inline) 632ms 14.62% 40.33% 647ms 14.96% MatMult_SeqAIJ_Inode (inline) 9ms 0.21% 40.54% 612ms 14.15% AbstractCardiacTissue::UpdateCaches (inline) 152ms 3.52% 44.06% 569ms 13.16% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 65ms 1.50% 45.56% 522ms 12.07% CardiacNewtonSolver::Solve 94ms 2.17% 47.73% 424ms 9.81% BidomainSolver::SetupLinearSystem 170ms 3.93% 51.67% 318ms 7.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 57ms 1.32% 52.98% 313ms 7.24% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 52.98% 274ms 6.34% KSP_PCApply (partial-inline) 0 0% 52.98% 268ms 6.20% KSPConvergedDefault 24ms 0.56% 53.54% 267ms 6.17% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 248ms 5.74% 59.27% 248ms 5.74% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 0 0% 59.27% 240ms 5.55% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 30ms 0.69% 59.97% 240ms 5.55% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 3ms 0.069% 60.04% 193ms 4.46% std::pow (inline) 27ms 0.62% 60.66% 190ms 4.39% __pow 123ms 2.84% 63.51% 175ms 4.05% __GI___exp 166ms 3.84% 67.35% 167ms 3.86% __ieee754_log_fma 21ms 0.49% 67.83% 163ms 3.77% __ieee754_pow_fma 2ms 0.046% 67.88% 135ms 3.12% MatNullSpaceRemove 0 0% 67.88% 129ms 2.98% boost::numeric::ublas::norm_inf (inline) 88ms 2.04% 69.91% 129ms 2.98% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 69.91% 129ms 2.98% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 69.91% 129ms 2.98% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 114ms 2.64% 72.55% 114ms 2.64% ddot_ 90ms 2.08% 74.63% 94ms 2.17% exp_inline (inline) 52ms 1.20% 75.83% 86ms 1.99% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 1ms 0.023% 75.86% 77ms 1.78% VecTDot 25ms 0.58% 76.43% 76ms 1.76% MPI_Wtime 2ms 0.046% 76.48% 76ms 1.76% VecNorm 0 0% 76.48% 75ms 1.73% VecMDot 6ms 0.14% 76.62% 75ms 1.73% VecMXDot_Private 0 0% 76.62% 67ms 1.55% VecTDot_Seq 0 0% 76.62% 67ms 1.55% VecXDot_Seq_Private.constprop.0 1ms 0.023% 76.64% 66ms 1.53% VecNorm_Seq 1ms 0.023% 76.67% 64ms 1.48% VecDuplicate 4ms 0.093% 76.76% 58ms 1.34% VecMAXPY 2ms 0.046% 76.80% 54ms 1.25% PetscLogEventEndDefault 53ms 1.23% 78.03% 54ms 1.25% VecMDot_Seq 3ms 0.069% 78.10% 51ms 1.18% __GI___clock_gettime 36ms 0.83% 78.93% 50ms 1.16% __ieee754_exp_fma 48ms 1.11% 80.04% 48ms 1.11% [[vdso]] 46ms 1.06% 81.11% 46ms 1.06% log_inline (inline) 45ms 1.04% 82.15% 45ms 1.04% [libchaste_heart.so] 13ms 0.3% 82.45% 43ms 0.99% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 82.45% 43ms 0.99% AbstractBidomainSolver::FinaliseLinearSystem 38ms 0.88% 83.33% 42ms 0.97% VecMAXPY_Seq 0 0% 83.33% 41ms 0.95% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 83.33% 41ms 0.95% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 83.33% 41ms 0.95% boost_numeric_ublas_abs (inline) 41ms 0.95% 84.27% 41ms 0.95% std::abs (inline) 8ms 0.19% 84.46% 40ms 0.93% PetscLogEventBeginDefault 0 0% 84.46% 35ms 0.81% CxxTest::RealWorldDescription::setUp 0 0% 84.46% 35ms 0.81% PMPI_Init_thread 0 0% 84.46% 35ms 0.81% PetscInitialize 0 0% 84.46% 35ms 0.81% PetscSetup::setUpWorld 0 0% 84.46% 35ms 0.81% PetscSetupUtils::CommonSetup 0 0% 84.46% 35ms 0.81% PetscSetupUtils::InitialisePetsc 0 0% 84.46% 35ms 0.81% ompi_mpi_init 4ms 0.093% 84.55% 34ms 0.79% VecDestroy 1ms 0.023% 84.57% 32ms 0.74% 2ms 0.046% 84.62% 32ms 0.74% VecDuplicate_Seq 0 0% 84.62% 32ms 0.74% VecNorm_MPI 0 0% 84.62% 32ms 0.74% VecNorm_MPI_Default.constprop.0 0 0% 84.62% 31ms 0.72% VecDuplicate_MPI 3ms 0.069% 84.69% 27ms 0.62% VecCreate 9ms 0.21% 84.90% 26ms 0.6% AbstractCardiacCell::SetVoltage 26ms 0.6% 85.50% 26ms 0.6% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 3ms 0.069% 85.57% 26ms 0.6% PetscMallocA 25ms 0.58% 86.15% 25ms 0.58% DistributedVector::Iterator::operator!= 3ms 0.069% 86.22% 25ms 0.58% VecCopy 24ms 0.56% 86.77% 24ms 0.56% DistributedVector::Stripe::operator[] (inline) 2ms 0.046% 86.82% 23ms 0.53% PetscMallocAlign 3ms 0.069% 86.89% 23ms 0.53% VecAXPY 0 0% 86.89% 22ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 8ms 0.19% 87.07% 22ms 0.51% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 22ms 0.51% 87.58% 22ms 0.51% DistributedVector::End