File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3622ms, 84.76% of 4273ms total Dropped 494 nodes (cum <= 21.36ms) flat flat% sum% cum cum% 0 0% 0% 4265ms 99.81% __libc_start_call_main 0 0% 0% 4265ms 99.81% __libc_start_main_impl 0 0% 0% 4265ms 99.81% _start 0 0% 0% 4262ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4262ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4262ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4262ms 99.74% main 0 0% 0% 4213ms 98.60% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4213ms 98.60% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4213ms 98.60% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4204ms 98.39% AbstractCardiacProblem::Solve 0 0% 0% 4185ms 97.94% AbstractDynamicLinearPdeSolver::Solve 21ms 0.49% 0.49% 2255ms 52.77% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.51% 1567ms 36.67% LinearSystem::Solve 1ms 0.023% 0.54% 1518ms 35.53% KSPSolve 5ms 0.12% 0.66% 1518ms 35.53% KSPSolve_Private 2ms 0.047% 0.7% 1464ms 34.26% KSPSolve_SYMMLQ 26ms 0.61% 1.31% 1258ms 29.44% AbstractCardiacCell::ComputeExceptVoltage 31ms 0.73% 2.04% 1076ms 25.18% AbstractOneStepIvpOdeSolver::InternalSolve 80ms 1.87% 3.91% 885ms 20.71% EulerIvpOdeSolver::CalculateNextYValue 1ms 0.023% 3.93% 878ms 20.55% PCApply 3ms 0.07% 4.00% 870ms 20.36% PCApply_BJacobi_Singleblock 32ms 0.75% 4.75% 807ms 18.89% AbstractCardiacTissue::UpdateCaches (inline) 217ms 5.08% 9.83% 791ms 18.51% CellLuoRudy1991FromCellML::EvaluateYDerivatives 245ms 5.73% 15.56% 736ms 17.22% CellLuoRudy1991FromCellML::GetIIonic 335ms 7.84% 23.40% 729ms 17.06% __GI___exp 0 0% 23.40% 716ms 16.76% KSPSolve_PREONLY (partial-inline) 2ms 0.047% 23.45% 674ms 15.77% MatSolve 0 0% 23.45% 674ms 15.77% PCApply_ICC 655ms 15.33% 38.78% 666ms 15.59% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 38.78% 665ms 15.56% KSP_PCApply.lto_priv.18 3ms 0.07% 38.85% 456ms 10.67% MatMult 13ms 0.3% 39.15% 443ms 10.37% MatMult_SeqAIJ (partial-inline) 424ms 9.92% 49.08% 443ms 10.37% MatMult_SeqAIJ_Inode (inline) 321ms 7.51% 56.59% 377ms 8.82% __ieee754_exp_fma 65ms 1.52% 58.11% 325ms 7.61% BidomainSolver::SetupLinearSystem 1ms 0.023% 58.13% 306ms 7.16% KSPConvergedDefault 0 0% 58.13% 295ms 6.90% KSP_PCApply (partial-inline) 1ms 0.023% 58.16% 268ms 6.27% std::pow (inline) 31ms 0.73% 58.88% 267ms 6.25% __pow 25ms 0.59% 59.47% 236ms 5.52% __ieee754_pow_fma 2ms 0.047% 59.51% 131ms 3.07% MatNullSpaceRemove 126ms 2.95% 62.46% 126ms 2.95% log_inline (inline) 23ms 0.54% 63.00% 103ms 2.41% MPI_Wtime 45ms 1.05% 64.05% 101ms 2.36% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 64.05% 92ms 2.15% VecDuplicate 1ms 0.023% 64.08% 81ms 1.90% VecMDot 5ms 0.12% 64.19% 80ms 1.87% VecMXDot_Private 5ms 0.12% 64.31% 77ms 1.80% __GI___clock_gettime 39ms 0.91% 65.22% 75ms 1.76% TimeStepper::TimeStepper 72ms 1.68% 66.91% 72ms 1.68% [[vdso]] 70ms 1.64% 68.55% 72ms 1.68% exp_inline (inline) 12ms 0.28% 68.83% 71ms 1.66% PetscLogEventBeginDefault 11ms 0.26% 69.08% 67ms 1.57% PetscLogEventEndDefault 15ms 0.35% 69.44% 65ms 1.52% AbstractCardiacCell::SetVoltage (partial-inline) 2ms 0.047% 69.48% 62ms 1.45% VecDot 62ms 1.45% 70.93% 62ms 1.45% ddot_ 58ms 1.36% 72.29% 58ms 1.36% [libchaste_heart.so] 7ms 0.16% 72.45% 54ms 1.26% VecCopy 52ms 1.22% 73.67% 54ms 1.26% VecMDot_Seq 2ms 0.047% 73.72% 52ms 1.22% VecDestroy 2ms 0.047% 73.77% 52ms 1.22% VecDuplicate_MPI 3ms 0.07% 73.84% 50ms 1.17% VecAXPY 42ms 0.98% 74.82% 50ms 1.17% top12 (inline) 1ms 0.023% 74.84% 48ms 1.12% VecMAXPY 2ms 0.047% 74.89% 47ms 1.10% PetscTimeSubtract (inline) 0 0% 74.89% 45ms 1.05% CxxTest::RealWorldDescription::setUp 0 0% 74.89% 45ms 1.05% PMPI_Init_thread 0 0% 74.89% 45ms 1.05% PetscInitialize 0 0% 74.89% 45ms 1.05% PetscSetup::setUpWorld 0 0% 74.89% 45ms 1.05% PetscSetupUtils::CommonSetup 0 0% 74.89% 45ms 1.05% PetscSetupUtils::InitialisePetsc 0 0% 74.89% 45ms 1.05% ompi_mpi_init 33ms 0.77% 75.66% 43ms 1.01% AbstractParameterisedSystem::SetAnyVariable 0 0% 75.66% 43ms 1.01% VecNorm 0 0% 75.66% 42ms 0.98% VecDot_Seq 0 0% 75.66% 42ms 0.98% VecXDot_Seq_Private.constprop.0 28ms 0.66% 76.32% 40ms 0.94% AbstractOneStepIvpOdeSolver::Solve 40ms 0.94% 77.25% 40ms 0.94% TimeStepper::CalculateNextTime 2ms 0.047% 77.30% 40ms 0.94% VecDuplicate_Seq 0 0% 77.30% 39ms 0.91% 38ms 0.89% 78.19% 38ms 0.89% __memcpy_avx_unaligned_erms 22ms 0.51% 78.70% 35ms 0.82% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 78.70% 35ms 0.82% VecNorm_Seq 29ms 0.68% 79.38% 34ms 0.8% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 79.38% 34ms 0.8% PetscMemcpy (inline) 1ms 0.023% 79.41% 32ms 0.75% AbstractBidomainSolver::FinaliseLinearSystem 6ms 0.14% 79.55% 32ms 0.75% PetscMallocA 31ms 0.73% 80.27% 32ms 0.75% VecMAXPY_Seq 10ms 0.23% 80.51% 31ms 0.73% AbstractBidomainSolver::CheckCompatibilityCondition 30ms 0.7% 81.21% 30ms 0.7% DistributedVector::Stripe::operator[] (inline) 2ms 0.047% 81.25% 30ms 0.7% VecAXPY_Seq 0 0% 81.25% 30ms 0.7% VecCreate 3ms 0.07% 81.32% 30ms 0.7% VecCreate_MPI_Private 29ms 0.68% 82.00% 29ms 0.68% __ieee754_log_fma 29ms 0.68% 82.68% 29ms 0.68% asuint64 (inline) 17ms 0.4% 83.08% 28ms 0.66% TimeStepper::AdvanceOneTimeStep 0 0% 83.08% 28ms 0.66% VecNorm_MPI 1ms 0.023% 83.10% 28ms 0.66% VecNorm_MPI_Default.constprop.0 0 0% 83.10% 28ms 0.66% orte_init 2ms 0.047% 83.15% 27ms 0.63% PetscHeaderDestroy_Private 27ms 0.63% 83.78% 27ms 0.63% daxpy_ 3ms 0.07% 83.85% 26ms 0.61% PetscMallocAlign 2ms 0.047% 83.90% 26ms 0.61% VecSetType 2ms 0.047% 83.95% 25ms 0.59% KSP_RemoveNullSpace (inline) 17ms 0.4% 84.34% 24ms 0.56% AbstractParameterisedSystem::GetAnyVariable 17ms 0.4% 84.74% 24ms 0.56% std::__cxx11::basic_string::basic_string 1ms 0.023% 84.76% 23ms 0.54% AbstractFeVolumeIntegralAssembler::DoAssemble