File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3647ms, 88.11% of 4139ms total Dropped 469 nodes (cum <= 20.70ms) flat flat% sum% cum cum% 0 0% 0% 4131ms 99.81% __libc_start_call_main 0 0% 0% 4131ms 99.81% __libc_start_main_impl 0 0% 0% 4131ms 99.81% _start 0 0% 0% 4129ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4129ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4129ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4129ms 99.76% main 0 0% 0% 4094ms 98.91% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4094ms 98.91% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4094ms 98.91% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4085ms 98.70% AbstractCardiacProblem::Solve 3ms 0.072% 0.097% 4074ms 98.43% AbstractDynamicLinearPdeSolver::Solve 15ms 0.36% 0.46% 2543ms 61.44% AbstractCardiacTissue::SolveCellSystems 43ms 1.04% 1.50% 1488ms 35.95% AbstractCardiacCell::ComputeExceptVoltage 34ms 0.82% 2.32% 1264ms 30.54% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.024% 2.34% 1112ms 26.87% LinearSystem::Solve 67ms 1.62% 3.96% 1075ms 25.97% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.96% 1074ms 25.95% KSPSolve 6ms 0.14% 4.11% 1074ms 25.95% KSPSolve_Private 1ms 0.024% 4.13% 1041ms 25.15% KSPSolve_SYMMLQ 288ms 6.96% 11.09% 995ms 24.04% CellLuoRudy1991FromCellML::EvaluateYDerivatives 396ms 9.57% 20.66% 893ms 21.58% __GI___exp 34ms 0.82% 21.48% 840ms 20.29% AbstractCardiacTissue::UpdateCaches (inline) 289ms 6.98% 28.46% 773ms 18.68% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 28.49% 664ms 16.04% PCApply 1ms 0.024% 28.51% 655ms 15.83% PCApply_BJacobi_Singleblock 0 0% 28.51% 547ms 13.22% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 28.53% 518ms 12.52% MatSolve 0 0% 28.53% 518ms 12.52% PCApply_ICC 510ms 12.32% 40.86% 514ms 12.42% MatSolve_SeqSBAIJ_1_NaturalOrdering 1ms 0.024% 40.88% 496ms 11.98% KSP_PCApply.lto_priv.18 444ms 10.73% 51.61% 474ms 11.45% __ieee754_exp_fma 5ms 0.12% 51.73% 412ms 9.95% MatMult 1ms 0.024% 51.75% 401ms 9.69% MatMult_SeqAIJ 399ms 9.64% 61.39% 401ms 9.69% MatMult_SeqAIJ_Inode (inline) 77ms 1.86% 63.25% 381ms 9.21% BidomainSolver::SetupLinearSystem 1ms 0.024% 63.28% 235ms 5.68% std::pow (inline) 24ms 0.58% 63.86% 234ms 5.65% __pow 1ms 0.024% 63.88% 229ms 5.53% KSPConvergedDefault 0 0% 63.88% 214ms 5.17% KSP_PCApply (partial-inline) 27ms 0.65% 64.53% 209ms 5.05% __ieee754_pow_fma 67ms 1.62% 66.15% 163ms 3.94% CellLuoRudy1991FromCellML::VerifyStateVariables 104ms 2.51% 68.66% 104ms 2.51% log_inline (inline) 0 0% 68.66% 81ms 1.96% VecDuplicate 0 0% 68.66% 79ms 1.91% MatNullSpaceRemove 69ms 1.67% 70.33% 71ms 1.72% exp_inline (inline) 30ms 0.72% 71.06% 69ms 1.67% TimeStepper::TimeStepper 8ms 0.19% 71.25% 55ms 1.33% MPI_Wtime 34ms 0.82% 72.07% 54ms 1.30% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 51ms 1.23% 73.30% 51ms 1.23% TimeStepper::CalculateNextTime 0 0% 73.30% 50ms 1.21% VecMDot 3ms 0.072% 73.38% 50ms 1.21% VecMXDot_Private 34ms 0.82% 74.20% 48ms 1.16% AbstractOneStepIvpOdeSolver::Solve 2ms 0.048% 74.24% 48ms 1.16% VecDuplicate_MPI 48ms 1.16% 75.40% 48ms 1.16% ddot_ 1ms 0.024% 75.43% 47ms 1.14% __GI___clock_gettime 46ms 1.11% 76.54% 46ms 1.11% [[vdso]] 10ms 0.24% 76.78% 44ms 1.06% AbstractCardiacCell::SetVoltage (partial-inline) 44ms 1.06% 77.84% 44ms 1.06% std::isinf (inline) 41ms 0.99% 78.84% 42ms 1.01% __ieee754_log_fma 5ms 0.12% 78.96% 40ms 0.97% PetscLogEventBeginDefault 12ms 0.29% 79.25% 38ms 0.92% PetscLogEventEndDefault 3ms 0.072% 79.32% 38ms 0.92% VecDot 2ms 0.048% 79.37% 37ms 0.89% VecCreate 15ms 0.36% 79.73% 37ms 0.89% top12 (inline) 2ms 0.048% 79.78% 36ms 0.87% VecDestroy 35ms 0.85% 80.62% 36ms 0.87% VecMDot_Seq 29ms 0.7% 81.32% 35ms 0.85% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 81.32% 34ms 0.82% VecDot_Seq 0 0% 81.32% 34ms 0.82% VecXDot_Seq_Private.constprop.0 18ms 0.43% 81.76% 33ms 0.8% TimeStepper::AdvanceOneTimeStep 0 0% 81.76% 33ms 0.8% VecDuplicate_Seq 32ms 0.77% 82.53% 32ms 0.77% [libchaste_heart.so] 11ms 0.27% 82.80% 32ms 0.77% std::__cxx11::basic_string::basic_string 0 0% 82.80% 31ms 0.75% CxxTest::RealWorldDescription::setUp 31ms 0.75% 83.55% 31ms 0.75% DistributedVector::Stripe::operator[] (inline) 0 0% 83.55% 31ms 0.75% PMPI_Init_thread 0 0% 83.55% 31ms 0.75% PetscInitialize 0 0% 83.55% 31ms 0.75% PetscSetup::setUpWorld 0 0% 83.55% 31ms 0.75% PetscSetupUtils::CommonSetup 0 0% 83.55% 31ms 0.75% PetscSetupUtils::InitialisePetsc 6ms 0.14% 83.69% 31ms 0.75% VecCopy 0 0% 83.69% 31ms 0.75% ompi_mpi_init 8ms 0.19% 83.88% 30ms 0.72% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 83.88% 30ms 0.72% AbstractBidomainSolver::FinaliseLinearSystem 5ms 0.12% 84.01% 29ms 0.7% PetscMallocA 7ms 0.17% 84.17% 29ms 0.7% VecMAXPY 1ms 0.024% 84.20% 29ms 0.7% VecNorm 25ms 0.6% 84.80% 28ms 0.68% AbstractParameterisedSystem::SetAnyVariable 1ms 0.024% 84.83% 28ms 0.68% KSP_RemoveNullSpace (inline) 14ms 0.34% 85.17% 26ms 0.63% AbstractCardiacCell::GetVoltage (partial-inline) 1ms 0.024% 85.19% 26ms 0.63% VecCreate_MPI_Private 26ms 0.63% 85.82% 26ms 0.63% __memcpy_avx_unaligned_erms 0 0% 85.82% 25ms 0.6% VecNorm_Seq 25ms 0.6% 86.42% 25ms 0.6% asuint64 (inline) 0 0% 86.42% 24ms 0.58% 20ms 0.48% 86.91% 24ms 0.58% AbstractParameterisedSystem::GetAnyVariable 1ms 0.024% 86.93% 24ms 0.58% PetscMallocAlign 24ms 0.58% 87.51% 24ms 0.58% [libm.so.6] 2ms 0.048% 87.56% 23ms 0.56% VecAXPY 0 0% 87.56% 23ms 0.56% orte_init 23ms 0.56% 88.11% 23ms 0.56% std::vector::operator[] (inline) 0 0% 88.11% 21ms 0.51% PetscHeaderCreate_Private