File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3724ms, 87.71% of 4246ms total Dropped 447 nodes (cum <= 21.23ms) flat flat% sum% cum cum% 0 0% 0% 4238ms 99.81% __libc_start_call_main 0 0% 0% 4238ms 99.81% __libc_start_main_impl 0 0% 0% 4238ms 99.81% _start 0 0% 0% 4235ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4235ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4235ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4235ms 99.74% main 0 0% 0% 4198ms 98.87% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4198ms 98.87% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4198ms 98.87% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4191ms 98.70% AbstractCardiacProblem::Solve 1ms 0.024% 0.024% 4179ms 98.42% AbstractDynamicLinearPdeSolver::Solve 11ms 0.26% 0.28% 2180ms 51.34% AbstractCardiacTissue::SolveCellSystems 0 0% 0.28% 1489ms 35.07% LinearSystem::Solve 0 0% 0.28% 1454ms 34.24% KSPSolve 4ms 0.094% 0.38% 1454ms 34.24% KSPSolve_Private 0 0% 0.38% 1408ms 33.16% KSPSolve_SYMMLQ 39ms 0.92% 1.30% 1274ms 30.00% AbstractCardiacCell::ComputeExceptVoltage 14ms 0.33% 1.63% 1078ms 25.39% AbstractOneStepIvpOdeSolver::InternalSolve 52ms 1.22% 2.85% 922ms 21.71% EulerIvpOdeSolver::CalculateNextYValue 0 0% 2.85% 896ms 21.10% PCApply 0 0% 2.85% 891ms 20.98% PCApply_BJacobi_Singleblock 255ms 6.01% 8.86% 859ms 20.23% CellLuoRudy1991FromCellML::EvaluateYDerivatives 310ms 7.30% 16.16% 766ms 18.04% __GI___exp 0 0% 16.16% 757ms 17.83% KSPSolve_PREONLY (partial-inline) 2ms 0.047% 16.20% 716ms 16.86% MatSolve 0 0% 16.20% 716ms 16.86% PCApply_ICC 21ms 0.49% 16.70% 714ms 16.82% AbstractCardiacTissue::UpdateCaches (inline) 702ms 16.53% 33.23% 709ms 16.70% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 234ms 5.51% 38.74% 670ms 15.78% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 38.77% 640ms 15.07% KSP_PCApply.lto_priv.18 6ms 0.14% 38.91% 528ms 12.44% MatMult 5ms 0.12% 39.02% 511ms 12.03% MatMult_SeqAIJ 501ms 11.80% 50.82% 510ms 12.01% MatMult_SeqAIJ_Inode (inline) 103ms 2.43% 53.25% 464ms 10.93% BidomainSolver::SetupLinearSystem 409ms 9.63% 62.88% 444ms 10.46% __ieee754_exp_fma 3ms 0.071% 62.95% 331ms 7.80% KSPConvergedDefault 0 0% 62.95% 322ms 7.58% KSP_PCApply (partial-inline) 3ms 0.071% 63.02% 220ms 5.18% std::pow (inline) 18ms 0.42% 63.45% 217ms 5.11% __pow 21ms 0.49% 63.94% 198ms 4.66% __ieee754_pow_fma 58ms 1.37% 65.31% 142ms 3.34% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 65.31% 109ms 2.57% MatNullSpaceRemove 95ms 2.24% 67.55% 95ms 2.24% log_inline (inline) 0 0% 67.55% 88ms 2.07% VecDuplicate 76ms 1.79% 69.34% 77ms 1.81% exp_inline (inline) 25ms 0.59% 69.92% 76ms 1.79% MPI_Wtime 40ms 0.94% 70.87% 74ms 1.74% TimeStepper::TimeStepper 1ms 0.024% 70.89% 72ms 1.70% VecMDot 6ms 0.14% 71.03% 71ms 1.67% VecMXDot_Private 60ms 1.41% 72.44% 60ms 1.41% ddot_ 18ms 0.42% 72.87% 57ms 1.34% PetscLogEventEndDefault 0 0% 72.87% 51ms 1.20% VecDot 51ms 1.20% 74.07% 51ms 1.20% [[vdso]] 0 0% 74.07% 51ms 1.20% __GI___clock_gettime 7ms 0.16% 74.23% 49ms 1.15% PetscLogEventBeginDefault 47ms 1.11% 75.34% 49ms 1.15% VecMDot_Seq 3ms 0.071% 75.41% 48ms 1.13% VecDuplicate_MPI 7ms 0.16% 75.58% 45ms 1.06% PetscMallocA 3ms 0.071% 75.65% 45ms 1.06% VecCopy 0 0% 75.65% 45ms 1.06% VecDestroy 24ms 0.57% 76.21% 41ms 0.97% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 76.21% 40ms 0.94% AbstractBidomainSolver::FinaliseLinearSystem 39ms 0.92% 77.13% 40ms 0.94% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 30ms 0.71% 77.84% 40ms 0.94% AbstractOneStepIvpOdeSolver::Solve 40ms 0.94% 78.78% 40ms 0.94% DistributedVector::Stripe::operator[] (inline) 1ms 0.024% 78.80% 40ms 0.94% VecCreate 0 0% 78.80% 40ms 0.94% VecDot_Seq 3ms 0.071% 78.87% 40ms 0.94% VecDuplicate_Seq 0 0% 78.87% 40ms 0.94% VecXDot_Seq_Private.constprop.0 40ms 0.94% 79.82% 40ms 0.94% __memcpy_avx_unaligned_erms 8ms 0.19% 80.00% 39ms 0.92% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.00% 39ms 0.92% VecNorm 11ms 0.26% 80.26% 39ms 0.92% top12 (inline) 2ms 0.047% 80.31% 38ms 0.89% PetscMallocAlign 38ms 0.89% 81.21% 38ms 0.89% std::isinf (inline) 37ms 0.87% 82.08% 37ms 0.87% TimeStepper::CalculateNextTime 4ms 0.094% 82.17% 37ms 0.87% VecMAXPY 35ms 0.82% 83.00% 37ms 0.87% __ieee754_log_fma 35ms 0.82% 83.82% 35ms 0.82% [libchaste_heart.so] 7ms 0.16% 83.98% 34ms 0.8% AbstractCardiacCell::SetVoltage (partial-inline) 4ms 0.094% 84.08% 34ms 0.8% VecAXPY 0 0% 84.08% 32ms 0.75% CxxTest::RealWorldDescription::setUp 0 0% 84.08% 32ms 0.75% PMPI_Init_thread 0 0% 84.08% 32ms 0.75% PetscInitialize 0 0% 84.08% 32ms 0.75% PetscMemcpy (inline) 0 0% 84.08% 32ms 0.75% PetscSetup::setUpWorld 0 0% 84.08% 32ms 0.75% PetscSetupUtils::CommonSetup 0 0% 84.08% 32ms 0.75% PetscSetupUtils::InitialisePetsc 32ms 0.75% 84.83% 32ms 0.75% asuint64 (inline) 0 0% 84.83% 32ms 0.75% ompi_mpi_init 31ms 0.73% 85.56% 31ms 0.73% DistributedVector::Iterator::operator!= 0 0% 85.56% 31ms 0.73% VecNorm_Seq 1ms 0.024% 85.59% 27ms 0.64% 21ms 0.49% 86.08% 26ms 0.61% AbstractParameterisedSystem::GetAnyVariable 0 0% 86.08% 23ms 0.54% VecAXPY_Seq 0 0% 86.08% 23ms 0.54% VecCopy_Seq (partial-inline) 22ms 0.52% 86.60% 23ms 0.54% VecMAXPY_Seq 5ms 0.12% 86.72% 23ms 0.54% __GI___libc_malloc 1ms 0.024% 86.74% 23ms 0.54% __posix_memalign 0 0% 86.74% 23ms 0.54% orte_init 7ms 0.16% 86.91% 23ms 0.54% std::__cxx11::basic_string::basic_string 8ms 0.19% 87.09% 22ms 0.52% AbstractCardiacCell::GetVoltage (partial-inline) 2ms 0.047% 87.14% 22ms 0.52% PetscHeaderDestroy_Private 22ms 0.52% 87.66% 22ms 0.52% daxpy_ 2ms 0.047% 87.71% 22ms 0.52% std::vector::_M_assign_aux (inline) 0 0% 87.71% 22ms 0.52% std::vector::assign (inline)