File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109099ms, 91.89% of 118726ms total Dropped 1161 nodes (cum <= 593.63ms) flat flat% sum% cum cum% 0 0% 0% 118710ms 100% __libc_start_call_main 0 0% 0% 118710ms 100% __libc_start_main_impl 0 0% 0% 118710ms 100% _start 0 0% 0% 118707ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118707ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118707ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118707ms 100% main 0 0% 0% 118671ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118671ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118671ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118671ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118671ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 118670ms 100% AbstractConvergenceTester::Converge 4ms 0.0034% 0.0034% 117421ms 98.90% AbstractCardiacProblem::Solve 15ms 0.013% 0.016% 116645ms 98.25% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0059% 0.022% 65203ms 54.92% LinearSystem::Solve 2ms 0.0017% 0.024% 64811ms 54.59% KSPSolve 14ms 0.012% 0.035% 64810ms 54.59% KSPSolve_Private 13ms 0.011% 0.046% 64395ms 54.24% KSPSolve_SYMMLQ 211ms 0.18% 0.22% 42673ms 35.94% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.23% 36908ms 31.09% PCApply 2ms 0.0017% 0.23% 36900ms 31.08% PCApply_BJacobi_Singleblock 1ms 0.00084% 0.23% 34450ms 29.02% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.23% 33311ms 28.06% MatSolve 0 0% 0.23% 33311ms 28.06% PCApply_ICC 32820ms 27.64% 27.87% 33308ms 28.05% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1433ms 1.21% 29.08% 32919ms 27.73% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 29.08% 31758ms 26.75% KSP_PCApply.lto_priv.18 6887ms 5.80% 34.88% 28340ms 23.87% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 8ms 0.0067% 34.89% 21736ms 18.31% MatMult 248ms 0.21% 35.10% 21728ms 18.30% MatMult_SeqAIJ (partial-inline) 21224ms 17.88% 52.97% 21727ms 18.30% MatMult_SeqAIJ_Inode (inline) 1935ms 1.63% 54.60% 14729ms 12.41% CardiacNewtonSolver::Solve 312ms 0.26% 54.87% 8923ms 7.52% AbstractCardiacTissue::UpdateCaches (inline) 4465ms 3.76% 58.63% 8792ms 7.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1962ms 1.65% 60.28% 8402ms 7.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1104ms 0.93% 61.21% 7697ms 6.48% BidomainSolver::SetupLinearSystem 1078ms 0.91% 62.12% 7229ms 6.09% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00084% 62.12% 7139ms 6.01% KSP_PCApply (partial-inline) 8ms 0.0067% 62.13% 6528ms 5.50% KSPConvergedDefault 5876ms 4.95% 67.07% 5876ms 4.95% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 4031ms 3.40% 70.47% 4081ms 3.44% __ieee754_log_fma 0 0% 70.47% 3586ms 3.02% boost::numeric::ublas::norm_inf (inline) 2452ms 2.07% 72.54% 3586ms 3.02% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.54% 3586ms 3.02% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.54% 3586ms 3.02% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0059% 72.54% 3338ms 2.81% MatNullSpaceRemove 21ms 0.018% 72.56% 3170ms 2.67% std::pow (inline) 390ms 0.33% 72.89% 3144ms 2.65% __pow 3073ms 2.59% 75.48% 3073ms 2.59% __memcpy_avx_unaligned_erms 0 0% 75.48% 3034ms 2.56% PetscMemcpy (inline) 1801ms 1.52% 76.99% 2958ms 2.49% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2781ms 2.34% 79.33% 2781ms 2.34% ddot_ 382ms 0.32% 79.66% 2747ms 2.31% __ieee754_pow_fma 15ms 0.013% 79.67% 2578ms 2.17% VecCopy 3ms 0.0025% 79.67% 2559ms 2.16% VecCopy_Seq (partial-inline) 12ms 0.01% 79.68% 2393ms 2.02% VecAXPY 7ms 0.0059% 79.69% 2381ms 2.01% VecAXPY_Seq 2363ms 1.99% 81.68% 2363ms 1.99% daxpy_ 4ms 0.0034% 81.68% 2249ms 1.89% VecDot 0 0% 81.68% 2245ms 1.89% VecDot_Seq 2ms 0.0017% 81.68% 2245ms 1.89% VecXDot_Seq_Private.constprop.0 3ms 0.0025% 81.69% 2072ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.69% 1903ms 1.60% VecMDot 13ms 0.011% 81.70% 1901ms 1.60% VecMXDot_Private 1873ms 1.58% 83.28% 1882ms 1.59% VecMDot_Seq 32ms 0.027% 83.30% 1712ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1512ms 1.27% 84.58% 1582ms 1.33% exp_inline (inline) 1435ms 1.21% 85.78% 1435ms 1.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 6ms 0.0051% 85.79% 1428ms 1.20% VecMAXPY 0 0% 85.79% 1424ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1418ms 1.19% 86.98% 1422ms 1.20% VecMAXPY_Seq 11ms 0.0093% 86.99% 1124ms 0.95% boost::numeric::ublas::matrix_assign (inline) 227ms 0.19% 87.18% 1111ms 0.94% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.18% 1103ms 0.93% CuboidMeshConstructor::Construct 0 0% 87.18% 1102ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00084% 87.19% 1102ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 826ms 0.7% 87.88% 1075ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00084% 87.88% 1053ms 0.89% KSP_RemoveNullSpace (inline) 0 0% 87.88% 1050ms 0.88% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.88% 1050ms 0.88% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.88% 1050ms 0.88% boost_numeric_ublas_abs (inline) 1050ms 0.88% 88.77% 1050ms 0.88% std::abs (inline) 1017ms 0.86% 89.62% 1017ms 0.86% __memset_avx2_unaligned_erms 0 0% 89.62% 1011ms 0.85% Element::Element 0 0% 89.62% 1009ms 0.85% PetscMemzero (inline) 3ms 0.0025% 89.63% 992ms 0.84% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.63% 942ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 7ms 0.0059% 89.63% 889ms 0.75% BidomainAssembler::ComputeMatrixTerm 864ms 0.73% 90.36% 864ms 0.73% [libchaste_heart.so] 6ms 0.0051% 90.37% 859ms 0.72% boost::numeric::ublas::c_matrix::c_matrix (inline) 2ms 0.0017% 90.37% 839ms 0.71% VecDuplicate 6ms 0.0051% 90.37% 836ms 0.7% VecScale 2ms 0.0017% 90.37% 830ms 0.7% VecScale_Seq 827ms 0.7% 91.07% 827ms 0.7% dscal_ 1ms 0.00084% 91.07% 747ms 0.63% AbstractBidomainSolver::FinaliseLinearSystem 215ms 0.18% 91.25% 743ms 0.63% AbstractBidomainSolver::CheckCompatibilityCondition 740ms 0.62% 91.88% 740ms 0.62% log_inline (inline) 1ms 0.00084% 91.88% 734ms 0.62% VecNorm 1ms 0.00084% 91.88% 731ms 0.62% VecNorm_Seq 0 0% 91.88% 715ms 0.6% BidomainProblem::WriteOneStep 8ms 0.0067% 91.88% 708ms 0.6% PetscMallocA 8ms 0.0067% 91.89% 700ms 0.59% PetscMallocAlign (partial-inline) 0 0% 91.89% 648ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.89% 596ms 0.5% boost::numeric::ublas::matrix_slice::operator= (inline)