File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 411ms, 85.80% of 479ms total Dropped 194 nodes (cum <= 2.40ms) flat flat% sum% cum cum% 0 0% 0% 471ms 98.33% __libc_start_call_main 0 0% 0% 471ms 98.33% __libc_start_main_impl 0 0% 0% 471ms 98.33% _start 0 0% 0% 468ms 97.70% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 468ms 97.70% CxxTest::TestRunner::runAllTests 0 0% 0% 468ms 97.70% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 468ms 97.70% main 0 0% 0% 429ms 89.56% CxxTest::RealTestDescription::run 0 0% 0% 429ms 89.56% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 429ms 89.56% CxxTest::TestRunner::runTest (inline) 0 0% 0% 429ms 89.56% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 429ms 89.56% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 426ms 88.94% AbstractCardiacProblem::Solve 0 0% 0% 424ms 88.52% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 385ms 80.38% LinearSystem::Solve 0 0% 0% 382ms 79.75% KSPSolve 0 0% 0% 382ms 79.75% KSPSolve_Private 2ms 0.42% 0.42% 381ms 79.54% KSPSolve_CG 0 0% 0.42% 227ms 47.39% KSP_PCApply.lto_priv.7 1ms 0.21% 0.63% 218ms 45.51% PCApply 0 0% 0.63% 217ms 45.30% PCApply_BJacobi_Singleblock 0 0% 0.63% 174ms 36.33% KSPSolve_PREONLY (partial-inline) 0 0% 0.63% 164ms 34.24% MatSolve 159ms 33.19% 33.82% 164ms 34.24% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 33.82% 164ms 34.24% PCApply_ICC 62ms 12.94% 46.76% 62ms 12.94% ddot_ 0 0% 46.76% 61ms 12.73% MatMult 0 0% 46.76% 61ms 12.73% MatMult_SeqAIJ 60ms 12.53% 59.29% 61ms 12.73% MatMult_SeqAIJ_Inode (inline) 0 0% 59.29% 38ms 7.93% MatNullSpaceRemove 0 0% 59.29% 36ms 7.52% CxxTest::RealWorldDescription::setUp 0 0% 59.29% 36ms 7.52% PetscInitialize 0 0% 59.29% 36ms 7.52% PetscSetup::setUpWorld 0 0% 59.29% 36ms 7.52% PetscSetupUtils::CommonSetup 0 0% 59.29% 36ms 7.52% PetscSetupUtils::InitialisePetsc 0 0% 59.29% 35ms 7.31% PMPI_Init_thread 0 0% 59.29% 35ms 7.31% ompi_mpi_init 0 0% 59.29% 34ms 7.10% VecTDot 0 0% 59.29% 34ms 7.10% VecTDot_Seq 0 0% 59.29% 34ms 7.10% VecXDot_Seq_Private.constprop.0 1ms 0.21% 59.50% 32ms 6.68% AbstractCardiacTissue::SolveCellSystems 0 0% 59.50% 30ms 6.26% 0 0% 59.50% 29ms 6.05% VecNorm 1ms 0.21% 59.71% 29ms 6.05% VecNorm_Seq 0 0% 59.71% 23ms 4.80% VecMDot 21ms 4.38% 64.09% 23ms 4.80% VecMDot_Seq 0 0% 64.09% 23ms 4.80% VecMXDot_Private 0 0% 64.09% 23ms 4.80% orte_init 1ms 0.21% 64.30% 22ms 4.59% AbstractCardiacCell::ComputeExceptVoltage 2ms 0.42% 64.72% 19ms 3.97% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 64.72% 16ms 3.34% VecAYPX 16ms 3.34% 68.06% 16ms 3.34% VecAYPX_Seq 0 0% 68.06% 16ms 3.34% VecDuplicate 5ms 1.04% 69.10% 15ms 3.13% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 69.10% 15ms 3.13% EulerIvpOdeSolver::CalculateNextYValue 0 0% 69.10% 15ms 3.13% VecDuplicate_Seq 0 0% 69.10% 15ms 3.13% VecMAXPY 15ms 3.13% 72.23% 15ms 3.13% VecMAXPY_Seq 0 0% 72.23% 15ms 3.13% __GI__dl_catch_exception 0 0% 72.23% 15ms 3.13% _dl_catch_error 0 0% 72.23% 15ms 3.13% _dlerror_run 0 0% 72.23% 14ms 2.92% opal_stackframe_output 5ms 1.04% 73.28% 13ms 2.71% __GI___exp 0 0% 73.28% 13ms 2.71% hwloc_topology_load 0 0% 73.28% 13ms 2.71% mca_base_framework_open 0 0% 73.28% 12ms 2.51% KSP_PCApply (partial-inline) 2ms 0.42% 73.70% 12ms 2.51% hwloc_linux_get_tid_last_cpu_location 0 0% 73.70% 12ms 2.51% mca_base_framework_components_register 0 0% 73.70% 12ms 2.51% mca_base_framework_register 0 0% 73.70% 11ms 2.30% VecAXPY 0 0% 73.70% 11ms 2.30% VecAXPY_Seq 0 0% 73.70% 11ms 2.30% ___dlopen 0 0% 73.70% 11ms 2.30% _dl_init 0 0% 73.70% 11ms 2.30% _dl_open 0 0% 73.70% 11ms 2.30% call_init (inline) 0 0% 73.70% 11ms 2.30% dl_open_worker 0 0% 73.70% 11ms 2.30% dlopen_doit 0 0% 73.70% 11ms 2.30% dlopen_implementation (inline) 0 0% 73.70% 10ms 2.09% mca_base_component_find 0 0% 73.70% 10ms 2.09% mca_base_component_repository_open 0 0% 73.70% 9ms 1.88% PetscMemcpy (inline) 9ms 1.88% 75.57% 9ms 1.88% __memcpy_avx_unaligned_erms 9ms 1.88% 77.45% 9ms 1.88% daxpy_ 2ms 0.42% 77.87% 8ms 1.67% VecCreate_Seq 0 0% 77.87% 8ms 1.67% VecSetType 0 0% 77.87% 8ms 1.67% _dl_start_user 0 0% 77.87% 8ms 1.67% dl_open_worker_begin 1ms 0.21% 78.08% 7ms 1.46% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 78.08% 7ms 1.46% VecDestroy 6ms 1.25% 79.33% 7ms 1.46% __ieee754_exp_fma 0 0% 79.33% 6ms 1.25% CellLuoRudy1991FromCellML::GetIIonic 0 0% 79.33% 6ms 1.25% PetscHeaderDestroy_Private 0 0% 79.33% 6ms 1.25% PetscMallocA 1ms 0.21% 79.54% 6ms 1.25% PetscMallocAlign 0 0% 79.54% 6ms 1.25% VecCreate 1ms 0.21% 79.75% 6ms 1.25% __GI___libc_malloc 2ms 0.42% 80.17% 6ms 1.25% boost::serialization::singleton::get_instance 0 0% 80.17% 6ms 1.25% mca_base_framework_components_open 0 0% 80.17% 6ms 1.25% mca_topo_base_dist_graph_neighbors_count 0 0% 80.17% 5ms 1.04% _dl_lookup_symbol_x 2ms 0.42% 80.58% 5ms 1.04% do_lookup_x 0 0% 80.58% 5ms 1.04% mca_base_component_repository_release 0 0% 80.58% 5ms 1.04% opal_hwloc_base_get_topology 0 0% 80.58% 5ms 1.04% orte_ess_base_proc_binding 1ms 0.21% 80.79% 4ms 0.84% BidomainSolver::SetupLinearSystem 2ms 0.42% 81.21% 4ms 0.84% PMPI_Comm_get_attr 0 0% 81.21% 4ms 0.84% VecCopy 0 0% 81.21% 4ms 0.84% VecCopy_Seq (partial-inline) 1ms 0.21% 81.42% 4ms 0.84% VecCreate_Seq_Private 4ms 0.84% 82.25% 4ms 0.84% __GI___libc_read 0 0% 82.25% 4ms 0.84% __dlclose 0 0% 82.25% 4ms 0.84% __posix_memalign 0 0% 82.25% 4ms 0.84% _dl_close 1ms 0.21% 82.46% 4ms 0.84% _dl_close_worker (inline) 0 0% 82.46% 4ms 0.84% _dl_map_object 0 0% 82.46% 4ms 0.84% _dl_map_object_from_fd 0 0% 82.46% 4ms 0.84% _dl_open_relocate_one_object (inline) 0 0% 82.46% 4ms 0.84% _dl_relocate_object 0 0% 82.46% 4ms 0.84% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 1ms 0.21% 82.67% 4ms 0.84% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 0 0% 82.67% 4ms 0.84% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 82.67% 4ms 0.84% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 82.67% 4ms 0.84% elf_dynamic_do_Rela (inline) 0 0% 82.67% 4ms 0.84% elf_machine_rela (inline) 0 0% 82.67% 4ms 0.84% mca_base_components_close 0 0% 82.67% 4ms 0.84% resolve_map (inline) 0 0% 82.67% 3ms 0.63% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 82.67% 3ms 0.63% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 82.67% 3ms 0.63% AbstractCardiacProblem::Initialise 0 0% 82.67% 3ms 0.63% CxxTest::RealWorldDescription::tearDown 0 0% 82.67% 3ms 0.63% DistributedTetrahedralMesh::ConstructFromMeshReader 3ms 0.63% 83.30% 3ms 0.63% DistributedVector::Iterator::operator!= 0 0% 83.30% 3ms 0.63% KSPConvergedDefault 1ms 0.21% 83.51% 3ms 0.63% PetscCommDestroy 0 0% 83.51% 3ms 0.63% PetscFinalize 0 0% 83.51% 3ms 0.63% PetscHeaderCreate_Private 0 0% 83.51% 3ms 0.63% PetscSetup::tearDownWorld 0 0% 83.51% 3ms 0.63% PetscSetupUtils::CommonFinalize 3ms 0.63% 84.13% 3ms 0.63% VecRestoreArray 0 0% 84.13% 3ms 0.63% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 3ms 0.63% 84.76% 3ms 0.63% __GI___clock_nanosleep 0 0% 84.76% 3ms 0.63% __GI___nanosleep 0 0% 84.76% 3ms 0.63% __GI_exit 0 0% 84.76% 3ms 0.63% __cxa_finalize 2ms 0.42% 85.18% 3ms 0.63% __ieee754_pow_fma 0 0% 85.18% 3ms 0.63% __pow 0 0% 85.18% 3ms 0.63% __run_exit_handlers 0 0% 85.18% 3ms 0.63% _dl_call_fini 0 0% 85.18% 3ms 0.63% _dl_fini 0 0% 85.18% 3ms 0.63% _dl_map_segments (inline) 2ms 0.42% 85.59% 3ms 0.63% _int_malloc 0 0% 85.59% 3ms 0.63% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 1ms 0.21% 85.80% 3ms 0.63% check_match 0 0% 85.80% 3ms 0.63% mca_base_var_group_register 0 0% 85.80% 3ms 0.63% mca_base_var_register 0 0% 85.80% 3ms 0.63% ompi_mpi_finalize 0 0% 85.80% 3ms 0.63% std::pow (inline) 0 0% 85.80% 3ms 0.63% usleep