File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12611ms, 84.32% of 14957ms total Dropped 743 nodes (cum <= 74.78ms) flat flat% sum% cum cum% 0 0% 0% 14949ms 99.95% __libc_start_call_main 0 0% 0% 14949ms 99.95% __libc_start_main_impl 0 0% 0% 14949ms 99.95% _start 0 0% 0% 14945ms 99.92% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14945ms 99.92% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14945ms 99.92% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14945ms 99.92% main 0 0% 0% 14901ms 99.63% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14901ms 99.63% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14900ms 99.62% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 0 0% 0% 14878ms 99.47% AbstractCardiacProblem::Solve 3ms 0.02% 0.02% 11278ms 75.40% AbstractDynamicLinearPdeSolver::Solve 76ms 0.51% 0.53% 8954ms 59.86% AbstractCardiacTissue::SolveCellSystems 88ms 0.59% 1.12% 5484ms 36.67% AbstractCardiacCell::ComputeExceptVoltage 121ms 0.81% 1.93% 4851ms 32.43% AbstractOneStepIvpOdeSolver::InternalSolve 188ms 1.26% 3.18% 4144ms 27.71% EulerIvpOdeSolver::CalculateNextYValue 925ms 6.18% 9.37% 3912ms 26.15% CellLuoRudy1991FromCellML::EvaluateYDerivatives 2ms 0.013% 9.38% 3525ms 23.57% MonodomainProblem::WriteOneStep 1746ms 11.67% 21.05% 3485ms 23.30% __GI___exp 4ms 0.027% 21.08% 3358ms 22.45% Hdf5DataWriter::PutVector 2ms 0.013% 21.09% 3348ms 22.38% H5Dwrite 3ms 0.02% 21.11% 3314ms 22.16% H5D__write 102ms 0.68% 21.80% 2718ms 18.17% AbstractCardiacTissue::UpdateCaches (inline) 802ms 5.36% 27.16% 2526ms 16.89% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.0067% 27.16% 2002ms 13.39% H5D__chunk_collective_write 11ms 0.074% 27.24% 2001ms 13.38% H5F_set_coll_metadata_reads 21ms 0.14% 27.38% 1782ms 11.91% H5FD_s3comms_uriencode 1346ms 9.00% 36.38% 1679ms 11.23% __ieee754_exp_fma 0 0% 36.38% 1504ms 10.06% LinearSystem::Solve 78ms 0.52% 36.90% 1394ms 9.32% 2ms 0.013% 36.91% 1381ms 9.23% H5F_block_write 1ms 0.0067% 36.92% 1379ms 9.22% H5PB_write 1ms 0.0067% 36.93% 1378ms 9.21% H5F__accum_write 0 0% 36.93% 1377ms 9.21% H5FD_write 0 0% 36.93% 1359ms 9.09% KSPSolve 0 0% 36.93% 1359ms 9.09% KSPSolve_Private 1ms 0.0067% 36.93% 1343ms 8.98% KSPSolve_CG 3ms 0.02% 36.95% 1275ms 8.52% H5D__mpio_select_write 9ms 0.06% 37.01% 1171ms 7.83% H5D__chunk_cacheable 2ms 0.013% 37.03% 1144ms 7.65% PMPI_File_write_at_all 1115ms 7.45% 44.48% 1119ms 7.48% __GI_pwritev64 328ms 2.19% 46.67% 1010ms 6.75% H5S_select_iterate 4ms 0.027% 46.70% 927ms 6.20% std::pow (inline) 83ms 0.55% 47.26% 921ms 6.16% __pow 71ms 0.47% 47.73% 837ms 5.60% __ieee754_pow_fma 380ms 2.54% 50.27% 799ms 5.34% MonodomainSolver::SetupLinearSystem 0 0% 50.27% 735ms 4.91% PCApply 1ms 0.0067% 50.28% 734ms 4.91% PCApply_BJacobi_Singleblock 0 0% 50.28% 703ms 4.70% KSPSolve_PREONLY 1ms 0.0067% 50.28% 703ms 4.70% MatSolve 0 0% 50.28% 703ms 4.70% PCApply_ICC 697ms 4.66% 54.94% 702ms 4.69% MatSolve_SeqSBAIJ_1_NaturalOrdering 73ms 0.49% 55.43% 695ms 4.65% H5D__chunk_set_sizes 2ms 0.013% 55.45% 603ms 4.03% MatMult 600ms 4.01% 59.46% 601ms 4.02% MatMult_SeqAIJ 92ms 0.62% 60.07% 522ms 3.49% H5S_mpio_space_type 229ms 1.53% 61.60% 500ms 3.34% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 61.60% 500ms 3.34% KSP_PCApply.lto_priv.7 404ms 2.70% 64.30% 404ms 2.70% log_inline (inline) 304ms 2.03% 66.34% 316ms 2.11% exp_inline (inline) 227ms 1.52% 67.85% 296ms 1.98% top12 (inline) 0 0% 67.85% 293ms 1.96% KSPConvergedDefault 122ms 0.82% 68.67% 288ms 1.93% TimeStepper::TimeStepper 0 0% 68.67% 236ms 1.58% KSP_PCApply 14ms 0.094% 68.76% 233ms 1.56% H5VM_chunk_index 226ms 1.51% 70.27% 226ms 1.51% [libchaste_heart.so] 42ms 0.28% 70.56% 202ms 1.35% __GI___libc_malloc 11ms 0.074% 70.63% 200ms 1.34% MPI_Type_free 7ms 0.047% 70.68% 197ms 1.32% ompi_datatype_destroy 156ms 1.04% 71.72% 188ms 1.26% _int_malloc 25ms 0.17% 71.89% 178ms 1.19% __GI___libc_free 9ms 0.06% 71.95% 176ms 1.18% ompi_info_register_framework_params 54ms 0.36% 72.31% 175ms 1.17% ompi_datatype_release_args 7ms 0.047% 72.35% 168ms 1.12% ompi_datatype_create 0 0% 72.35% 164ms 1.10% Hdf5DataWriter::PutUnlimitedVariable 164ms 1.10% 73.45% 164ms 1.10% asuint64 (inline) 157ms 1.05% 74.50% 157ms 1.05% ddot_ 40ms 0.27% 74.77% 156ms 1.04% AbstractCardiacCell::SetVoltage (partial-inline) 153ms 1.02% 75.79% 153ms 1.02% TimeStepper::CalculateNextTime 62ms 0.41% 76.21% 152ms 1.02% _int_free 33ms 0.22% 76.43% 144ms 0.96% H5S_set_version 0 0% 76.43% 144ms 0.96% PMPI_File_set_view 68ms 0.45% 76.88% 138ms 0.92% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 111ms 0.74% 77.62% 137ms 0.92% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 100ms 0.67% 78.29% 136ms 0.91% AbstractOneStepIvpOdeSolver::Solve 47ms 0.31% 78.61% 132ms 0.88% H5S_hyper_add_span_element 123ms 0.82% 79.43% 123ms 0.82% H5VM_chunk_index_scaled 1ms 0.0067% 79.43% 123ms 0.82% VecDuplicate 2ms 0.013% 79.45% 122ms 0.82% VecDuplicate_MPI 115ms 0.77% 80.22% 115ms 0.77% __ieee754_log_fma 114ms 0.76% 80.98% 114ms 0.76% __memcpy_avx_unaligned_erms 3ms 0.02% 81.00% 112ms 0.75% ompi_datatype_duplicate 112ms 0.75% 81.75% 112ms 0.75% std::isinf (inline) 39ms 0.26% 82.01% 111ms 0.74% H5VM_array_calc 2ms 0.013% 82.02% 109ms 0.73% PMPI_Type_create_resized 2ms 0.013% 82.04% 107ms 0.72% VecNorm 2ms 0.013% 82.05% 103ms 0.69% VecNorm_Seq 87ms 0.58% 82.63% 102ms 0.68% AbstractParameterisedSystem::GetAnyVariable 99ms 0.66% 83.29% 99ms 0.66% H5VM_array_offset_pre 76ms 0.51% 83.80% 94ms 0.63% AbstractParameterisedSystem::SetAnyVariable 0 0% 83.80% 88ms 0.59% VecTDot 0 0% 83.80% 88ms 0.59% VecTDot_Seq 0 0% 83.80% 88ms 0.59% VecXDot_Seq_Private.constprop.0 2ms 0.013% 83.81% 85ms 0.57% H5D__chunk_allocated 30ms 0.2% 84.01% 83ms 0.55% AbstractCardiacCell::GetVoltage (partial-inline) 1ms 0.0067% 84.02% 83ms 0.55% H5D__contig_fill 0 0% 84.02% 83ms 0.55% H5D__select_write 0 0% 84.02% 83ms 0.55% H5Dgather 7ms 0.047% 84.07% 83ms 0.55% MPI_Type_create_hindexed 1ms 0.0067% 84.07% 82ms 0.55% H5VM_opvv 0 0% 84.07% 81ms 0.54% H5D__contig_write 35ms 0.23% 84.31% 81ms 0.54% H5SL_search 0 0% 84.31% 77ms 0.51% std::vector::_M_assign_aux (inline) 0 0% 84.31% 77ms 0.51% std::vector::assign (inline) 1ms 0.0067% 84.32% 76ms 0.51% PMPI_File_write_at