File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110070ms, 91.30% of 120552ms total Dropped 1167 nodes (cum <= 602.76ms) flat flat% sum% cum cum% 0 0% 0% 120536ms 100% __libc_start_call_main 0 0% 0% 120536ms 100% __libc_start_main_impl 0 0% 0% 120536ms 100% _start 0 0% 0% 120533ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120533ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120533ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120533ms 100% main 0 0% 0% 120495ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120495ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120495ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120495ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120495ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120495ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 6ms 0.005% 0.005% 119225ms 98.90% AbstractCardiacProblem::Solve 10ms 0.0083% 0.013% 118384ms 98.20% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0058% 0.019% 66579ms 55.23% LinearSystem::Solve 7ms 0.0058% 0.025% 66051ms 54.79% KSPSolve 15ms 0.012% 0.037% 66045ms 54.79% KSPSolve_Private 24ms 0.02% 0.057% 65599ms 54.42% KSPSolve_SYMMLQ 217ms 0.18% 0.24% 42911ms 35.60% AbstractCardiacTissue::SolveCellSystems 5ms 0.0041% 0.24% 36987ms 30.68% PCApply 3ms 0.0025% 0.24% 36975ms 30.67% PCApply_BJacobi_Singleblock 6ms 0.005% 0.25% 34137ms 28.32% KSPSolve_PREONLY (partial-inline) 1408ms 1.17% 1.42% 33237ms 27.57% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0025% 1.42% 33048ms 27.41% PCApply_ICC 8ms 0.0066% 1.43% 33045ms 27.41% MatSolve 32548ms 27.00% 28.43% 33037ms 27.40% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 2ms 0.0017% 28.43% 32002ms 26.55% KSP_PCApply.lto_priv.18 6804ms 5.64% 34.07% 28747ms 23.85% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 20ms 0.017% 34.09% 22159ms 18.38% MatMult 230ms 0.19% 34.28% 22139ms 18.36% MatMult_SeqAIJ (partial-inline) 21596ms 17.91% 52.19% 22136ms 18.36% MatMult_SeqAIJ_Inode (inline) 1976ms 1.64% 53.83% 14779ms 12.26% CardiacNewtonSolver::Solve 551ms 0.46% 54.29% 8826ms 7.32% AbstractCardiacTissue::UpdateCaches (inline) 4412ms 3.66% 57.95% 8734ms 7.25% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1884ms 1.56% 59.51% 8050ms 6.68% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1361ms 1.13% 60.64% 7907ms 6.56% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1202ms 1% 61.64% 7867ms 6.53% BidomainSolver::SetupLinearSystem 0 0% 61.64% 6923ms 5.74% KSP_PCApply (partial-inline) 6ms 0.005% 61.64% 6380ms 5.29% KSPConvergedDefault 6286ms 5.21% 66.86% 6286ms 5.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3972ms 3.29% 70.15% 4016ms 3.33% __ieee754_log_fma 0 0% 70.15% 3665ms 3.04% boost::numeric::ublas::norm_inf (inline) 2440ms 2.02% 72.18% 3665ms 3.04% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.18% 3665ms 3.04% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.18% 3665ms 3.04% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3612ms 3.00% 75.17% 3612ms 3.00% __memcpy_avx_unaligned_erms 0 0% 75.17% 3565ms 2.96% PetscMemcpy (inline) 5ms 0.0041% 75.18% 3328ms 2.76% MatNullSpaceRemove 20ms 0.017% 75.19% 3116ms 2.58% VecCopy 6ms 0.005% 75.20% 3095ms 2.57% VecCopy_Seq (partial-inline) 1745ms 1.45% 76.64% 2906ms 2.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 30ms 0.025% 76.67% 2824ms 2.34% std::pow (inline) 2789ms 2.31% 78.98% 2789ms 2.31% ddot_ 402ms 0.33% 79.32% 2784ms 2.31% __pow 14ms 0.012% 79.33% 2622ms 2.17% VecAXPY 10ms 0.0083% 79.34% 2608ms 2.16% VecAXPY_Seq 2588ms 2.15% 81.48% 2588ms 2.15% daxpy_ 314ms 0.26% 81.74% 2366ms 1.96% __ieee754_pow_fma 6ms 0.005% 81.75% 2249ms 1.87% VecDot 0 0% 81.75% 2243ms 1.86% VecDot_Seq 3ms 0.0025% 81.75% 2243ms 1.86% VecXDot_Seq_Private.constprop.0 1ms 0.00083% 81.75% 2065ms 1.71% AbstractFeVolumeIntegralAssembler::DoAssemble 3ms 0.0025% 81.75% 1975ms 1.64% VecMDot 13ms 0.011% 81.77% 1972ms 1.64% VecMXDot_Private 1953ms 1.62% 83.39% 1955ms 1.62% VecMDot_Seq 22ms 0.018% 83.40% 1710ms 1.42% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1456ms 1.21% 84.61% 1516ms 1.26% exp_inline (inline) 0 0% 84.61% 1417ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 3ms 0.0025% 84.61% 1348ms 1.12% VecMAXPY 1341ms 1.11% 85.73% 1345ms 1.12% VecMAXPY_Seq 1330ms 1.10% 86.83% 1330ms 1.10% __memset_avx2_unaligned_erms 0 0% 86.83% 1321ms 1.10% PetscMemzero (inline) 1310ms 1.09% 87.92% 1310ms 1.09% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 87.92% 1153ms 0.96% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.92% 1153ms 0.96% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.92% 1153ms 0.96% boost_numeric_ublas_abs (inline) 1153ms 0.96% 88.87% 1153ms 0.96% std::abs (inline) 8ms 0.0066% 88.88% 1136ms 0.94% boost::numeric::ublas::matrix_assign (inline) 215ms 0.18% 89.06% 1121ms 0.93% boost::numeric::ublas::indexing_matrix_assign 0 0% 89.06% 1111ms 0.92% CuboidMeshConstructor::Construct 0 0% 89.06% 1110ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00083% 89.06% 1110ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 2ms 0.0017% 89.06% 1088ms 0.9% VecDuplicate 2ms 0.0017% 89.06% 1061ms 0.88% KSP_RemoveNullSpace (inline) 745ms 0.62% 89.68% 1010ms 0.84% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00083% 89.68% 1004ms 0.83% Element::Element 6ms 0.005% 89.69% 986ms 0.82% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.69% 929ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 20ms 0.017% 89.70% 907ms 0.75% PetscMallocA 6ms 0.005% 89.71% 887ms 0.74% PetscMallocAlign (partial-inline) 871ms 0.72% 90.43% 871ms 0.72% [libchaste_heart.so] 7ms 0.0058% 90.44% 868ms 0.72% boost::numeric::ublas::c_matrix::c_matrix (inline) 4ms 0.0033% 90.44% 866ms 0.72% BidomainAssembler::ComputeMatrixTerm 5ms 0.0041% 90.44% 863ms 0.72% VecScale 3ms 0.0025% 90.45% 858ms 0.71% VecScale_Seq 851ms 0.71% 91.15% 851ms 0.71% dscal_ 1ms 0.00083% 91.15% 803ms 0.67% VecNorm 1ms 0.00083% 91.15% 797ms 0.66% VecNorm_Seq 0 0% 91.15% 774ms 0.64% BidomainProblem::WriteOneStep 1ms 0.00083% 91.16% 707ms 0.59% VecDuplicate_Seq 3ms 0.0025% 91.16% 688ms 0.57% AbstractBidomainSolver::FinaliseLinearSystem 171ms 0.14% 91.30% 684ms 0.57% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.30% 648ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 6ms 0.005% 91.30% 617ms 0.51% VecSetType