File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3607ms, 85.13% of 4237ms total Dropped 489 nodes (cum <= 21.18ms) flat flat% sum% cum cum% 0 0% 0% 4229ms 99.81% __libc_start_call_main 0 0% 0% 4229ms 99.81% __libc_start_main_impl 0 0% 0% 4229ms 99.81% _start 0 0% 0% 4226ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4226ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4226ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4226ms 99.74% main 0 0% 0% 4184ms 98.75% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4184ms 98.75% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4184ms 98.75% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4176ms 98.56% AbstractCardiacProblem::Solve 2ms 0.047% 0.094% 4161ms 98.21% AbstractDynamicLinearPdeSolver::Solve 19ms 0.45% 0.54% 2270ms 53.58% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.57% 1495ms 35.28% LinearSystem::Solve 0 0% 0.57% 1446ms 34.13% KSPSolve 4ms 0.094% 0.66% 1446ms 34.13% KSPSolve_Private 1ms 0.024% 0.68% 1391ms 32.83% KSPSolve_SYMMLQ 31ms 0.73% 1.42% 1304ms 30.78% AbstractCardiacCell::ComputeExceptVoltage 22ms 0.52% 1.94% 1087ms 25.65% AbstractOneStepIvpOdeSolver::InternalSolve 61ms 1.44% 3.38% 903ms 21.31% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.047% 3.42% 871ms 20.56% PCApply 0 0% 3.42% 865ms 20.42% PCApply_BJacobi_Singleblock 218ms 5.15% 8.57% 829ms 19.57% CellLuoRudy1991FromCellML::EvaluateYDerivatives 31ms 0.73% 9.30% 781ms 18.43% AbstractCardiacTissue::UpdateCaches (inline) 344ms 8.12% 17.42% 740ms 17.47% __GI___exp 0 0% 17.42% 720ms 16.99% KSPSolve_PREONLY (partial-inline) 260ms 6.14% 23.55% 708ms 16.71% CellLuoRudy1991FromCellML::GetIIonic 2ms 0.047% 23.60% 676ms 15.95% MatSolve 0 0% 23.60% 676ms 15.95% PCApply_ICC 661ms 15.60% 39.20% 672ms 15.86% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 39.20% 665ms 15.70% KSP_PCApply.lto_priv.18 4ms 0.094% 39.30% 438ms 10.34% MatMult 15ms 0.35% 39.65% 426ms 10.05% MatMult_SeqAIJ (partial-inline) 407ms 9.61% 49.26% 426ms 10.05% MatMult_SeqAIJ_Inode (inline) 315ms 7.43% 56.69% 375ms 8.85% __ieee754_exp_fma 68ms 1.60% 58.30% 338ms 7.98% BidomainSolver::SetupLinearSystem 1ms 0.024% 58.32% 287ms 6.77% KSPConvergedDefault 0 0% 58.32% 277ms 6.54% KSP_PCApply (partial-inline) 1ms 0.024% 58.34% 247ms 5.83% std::pow (inline) 27ms 0.64% 58.98% 246ms 5.81% __pow 23ms 0.54% 59.52% 219ms 5.17% __ieee754_pow_fma 0 0% 59.52% 122ms 2.88% MatNullSpaceRemove 101ms 2.38% 61.91% 101ms 2.38% log_inline (inline) 25ms 0.59% 62.50% 100ms 2.36% MPI_Wtime 50ms 1.18% 63.68% 98ms 2.31% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 63.68% 97ms 2.29% VecDuplicate 82ms 1.94% 65.61% 84ms 1.98% exp_inline (inline) 0 0% 65.61% 82ms 1.94% VecMDot 4ms 0.094% 65.71% 82ms 1.94% VecMXDot_Private 1ms 0.024% 65.73% 74ms 1.75% __GI___clock_gettime 73ms 1.72% 67.45% 73ms 1.72% [[vdso]] 16ms 0.38% 67.83% 72ms 1.70% AbstractCardiacCell::SetVoltage (partial-inline) 31ms 0.73% 68.56% 70ms 1.65% TimeStepper::TimeStepper 15ms 0.35% 68.92% 69ms 1.63% PetscLogEventEndDefault 69ms 1.63% 70.55% 69ms 1.63% ddot_ 5ms 0.12% 70.66% 63ms 1.49% PetscLogEventBeginDefault 61ms 1.44% 72.10% 61ms 1.44% [libchaste_heart.so] 0 0% 72.10% 54ms 1.27% VecDot 2ms 0.047% 72.15% 54ms 1.27% VecDuplicate_MPI 52ms 1.23% 73.38% 53ms 1.25% VecMDot_Seq 25ms 0.59% 73.97% 52ms 1.23% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 5ms 0.12% 74.09% 49ms 1.16% VecCopy 42ms 0.99% 75.08% 47ms 1.11% AbstractParameterisedSystem::SetAnyVariable 1ms 0.024% 75.10% 47ms 1.11% VecDestroy 0 0% 75.10% 47ms 1.11% VecDot_Seq 2ms 0.047% 75.15% 47ms 1.11% VecNorm 1ms 0.024% 75.17% 47ms 1.11% VecXDot_Seq_Private.constprop.0 1ms 0.024% 75.19% 46ms 1.09% AbstractBidomainSolver::FinaliseLinearSystem 36ms 0.85% 76.04% 46ms 1.09% top12 (inline) 14ms 0.33% 76.37% 45ms 1.06% AbstractBidomainSolver::CheckCompatibilityCondition 44ms 1.04% 77.41% 44ms 1.04% TimeStepper::CalculateNextTime 44ms 1.04% 78.45% 44ms 1.04% __memcpy_avx_unaligned_erms 1ms 0.024% 78.48% 43ms 1.01% VecDuplicate_Seq 5ms 0.12% 78.59% 41ms 0.97% PetscMallocA 4ms 0.094% 78.69% 41ms 0.97% VecAXPY 24ms 0.57% 79.25% 40ms 0.94% AbstractOneStepIvpOdeSolver::Solve 2ms 0.047% 79.30% 40ms 0.94% VecCreate 3ms 0.071% 79.37% 40ms 0.94% VecMAXPY 1ms 0.024% 79.40% 40ms 0.94% VecNorm_Seq 1ms 0.024% 79.42% 39ms 0.92% KSP_RemoveNullSpace (inline) 0 0% 79.42% 37ms 0.87% CxxTest::RealWorldDescription::setUp 0 0% 79.42% 37ms 0.87% PetscInitialize 0 0% 79.42% 37ms 0.87% PetscSetup::setUpWorld 0 0% 79.42% 37ms 0.87% PetscSetupUtils::CommonSetup 0 0% 79.42% 37ms 0.87% PetscSetupUtils::InitialisePetsc 37ms 0.87% 80.29% 37ms 0.87% __ieee754_log_fma 37ms 0.87% 81.17% 37ms 0.87% asuint64 (inline) 0 0% 81.17% 36ms 0.85% PMPI_Init_thread 4ms 0.094% 81.26% 36ms 0.85% PetscMallocAlign 0 0% 81.26% 36ms 0.85% PetscMemcpy (inline) 0 0% 81.26% 36ms 0.85% ompi_mpi_init 27ms 0.64% 81.90% 34ms 0.8% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 14ms 0.33% 82.23% 32ms 0.76% TimeStepper::AdvanceOneTimeStep 31ms 0.73% 82.96% 31ms 0.73% DistributedVector::Iterator::operator!= 1ms 0.024% 82.98% 30ms 0.71% 5ms 0.12% 83.10% 30ms 0.71% VecCreate_MPI_Private (partial-inline) 23ms 0.54% 83.64% 28ms 0.66% AbstractParameterisedSystem::GetAnyVariable 27ms 0.64% 84.28% 27ms 0.64% DistributedVector::Stripe::operator[] (inline) 0 0% 84.28% 27ms 0.64% VecNorm_MPI 0 0% 84.28% 27ms 0.64% VecNorm_MPI_Default.constprop.0 13ms 0.31% 84.59% 25ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 0 0% 84.59% 24ms 0.57% orte_init 0 0% 84.59% 23ms 0.54% PetscHeaderCreate_Private 23ms 0.54% 85.13% 23ms 0.54% [libm.so.6] 0 0% 85.13% 22ms 0.52% std::vector::_M_assign_aux (inline) 0 0% 85.13% 22ms 0.52% std::vector::assign (inline)