File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 121126ms, 91.89% of 131819ms total Dropped 1168 nodes (cum <= 659.10ms) flat flat% sum% cum cum% 0 0% 0% 131805ms 100% __libc_start_call_main 0 0% 0% 131805ms 100% __libc_start_main_impl 0 0% 0% 131805ms 100% _start 0 0% 0% 131802ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 131802ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 131802ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 131802ms 100% main 0 0% 0% 131762ms 100% AbstractConvergenceTester::Converge 0 0% 0% 131762ms 100% CxxTest::RealTestDescription::run 0 0% 0% 131762ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 131762ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 131762ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 131762ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 6ms 0.0046% 0.0046% 130542ms 99.03% AbstractCardiacProblem::Solve 10ms 0.0076% 0.012% 129637ms 98.34% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0038% 0.016% 70487ms 53.47% LinearSystem::Solve 3ms 0.0023% 0.018% 70003ms 53.11% KSPSolve 6ms 0.0046% 0.023% 70001ms 53.10% KSPSolve_Private 11ms 0.0083% 0.031% 69634ms 52.83% KSPSolve_SYMMLQ 530ms 0.4% 0.43% 49899ms 37.85% AbstractCardiacTissue::SolveCellSystems 7ms 0.0053% 0.44% 40108ms 30.43% PCApply 7ms 0.0053% 0.44% 40090ms 30.41% PCApply_BJacobi_Singleblock 945ms 0.72% 1.16% 39271ms 29.79% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.003% 1.16% 37690ms 28.59% KSPSolve_PREONLY (partial-inline) 1ms 0.00076% 1.16% 36562ms 27.74% PCApply_ICC 5ms 0.0038% 1.17% 36561ms 27.74% MatSolve 36100ms 27.39% 28.55% 36556ms 27.73% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 7604ms 5.77% 34.32% 35053ms 26.59% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.0023% 34.33% 34613ms 26.26% KSP_PCApply.lto_priv.18 5ms 0.0038% 34.33% 23530ms 17.85% MatMult 330ms 0.25% 34.58% 23525ms 17.85% MatMult_SeqAIJ (partial-inline) 22974ms 17.43% 52.01% 23524ms 17.85% MatMult_SeqAIJ_Inode (inline) 2263ms 1.72% 53.72% 17024ms 12.91% CardiacNewtonSolver::Solve 1644ms 1.25% 54.97% 11108ms 8.43% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 5725ms 4.34% 59.31% 10192ms 7.73% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 9178ms 6.96% 66.28% 9178ms 6.96% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 241ms 0.18% 66.46% 9123ms 6.92% AbstractCardiacTissue::UpdateCaches (inline) 1701ms 1.29% 67.75% 8510ms 6.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1282ms 0.97% 68.72% 8186ms 6.21% BidomainSolver::SetupLinearSystem 1ms 0.00076% 68.72% 7561ms 5.74% KSP_PCApply (partial-inline) 8ms 0.0061% 68.73% 7050ms 5.35% KSPConvergedDefault 4168ms 3.16% 71.89% 4257ms 3.23% __ieee754_log_fma 0 0% 71.89% 4097ms 3.11% boost::numeric::ublas::norm_inf (inline) 2840ms 2.15% 74.05% 4097ms 3.11% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 74.05% 4097ms 3.11% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 74.05% 4097ms 3.11% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3578ms 2.71% 76.76% 3578ms 2.71% ddot_ 10ms 0.0076% 76.77% 3486ms 2.64% MatNullSpaceRemove 28ms 0.021% 76.79% 3408ms 2.59% std::pow (inline) 400ms 0.3% 77.09% 3367ms 2.55% __pow 2013ms 1.53% 78.62% 3091ms 2.34% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 13ms 0.0099% 78.63% 3011ms 2.28% VecDot 1ms 0.00076% 78.63% 2998ms 2.27% VecDot_Seq 3ms 0.0023% 78.63% 2997ms 2.27% VecXDot_Seq_Private.constprop.0 414ms 0.31% 78.95% 2937ms 2.23% __ieee754_pow_fma 2822ms 2.14% 81.09% 2822ms 2.14% __memcpy_avx_unaligned_erms 0 0% 81.09% 2777ms 2.11% PetscMemcpy (inline) 30ms 0.023% 81.11% 2364ms 1.79% VecCopy 2ms 0.0015% 81.11% 2328ms 1.77% VecCopy_Seq (partial-inline) 2ms 0.0015% 81.11% 2135ms 1.62% VecMDot 18ms 0.014% 81.13% 2133ms 1.62% VecMXDot_Private 2104ms 1.60% 82.72% 2111ms 1.60% VecMDot_Seq 17ms 0.013% 82.74% 2087ms 1.58% VecAXPY 5ms 0.0038% 82.74% 2070ms 1.57% VecAXPY_Seq 2054ms 1.56% 84.30% 2054ms 1.56% daxpy_ 0 0% 84.30% 2006ms 1.52% AbstractFeVolumeIntegralAssembler::DoAssemble 28ms 0.021% 84.32% 1680ms 1.27% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1568ms 1.19% 85.51% 1635ms 1.24% exp_inline (inline) 0 0% 85.51% 1399ms 1.06% AbstractFeAssemblerInterface::AssembleMatrix (inline) 4ms 0.003% 85.51% 1341ms 1.02% VecMAXPY 1329ms 1.01% 86.52% 1337ms 1.01% VecMAXPY_Seq 0 0% 86.52% 1251ms 0.95% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.52% 1251ms 0.95% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.52% 1251ms 0.95% boost_numeric_ublas_abs (inline) 1251ms 0.95% 87.47% 1251ms 0.95% std::abs (inline) 1197ms 0.91% 88.38% 1197ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 3ms 0.0023% 88.38% 1139ms 0.86% KSP_RemoveNullSpace (inline) 10ms 0.0076% 88.39% 1107ms 0.84% boost::numeric::ublas::matrix_assign (inline) 218ms 0.17% 88.55% 1091ms 0.83% boost::numeric::ublas::indexing_matrix_assign 1046ms 0.79% 89.35% 1046ms 0.79% [libchaste_heart.so] 0 0% 89.35% 1043ms 0.79% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 89.35% 1043ms 0.79% CuboidMeshConstructor::Construct 2ms 0.0015% 89.35% 1043ms 0.79% DistributedTetrahedralMesh::ConstructCuboid 607ms 0.46% 89.81% 1012ms 0.77% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.003% 89.81% 942ms 0.71% Element::Element 6ms 0.0046% 89.82% 917ms 0.7% AbstractTetrahedralElement::CalculateJacobian 10ms 0.0076% 89.82% 891ms 0.68% VecScale 8ms 0.0061% 89.83% 887ms 0.67% BidomainAssembler::ComputeMatrixTerm 0 0% 89.83% 881ms 0.67% VecScale_Seq 880ms 0.67% 90.50% 880ms 0.67% dscal_ 4ms 0.003% 90.50% 870ms 0.66% AbstractTetrahedralElement::AbstractTetrahedralElement 846ms 0.64% 91.14% 846ms 0.64% log_inline (inline) 7ms 0.0053% 91.15% 845ms 0.64% boost::numeric::ublas::c_matrix::c_matrix (inline) 4ms 0.003% 91.15% 840ms 0.64% VecNorm 2ms 0.0015% 91.15% 826ms 0.63% VecNorm_Seq 1ms 0.00076% 91.15% 824ms 0.63% BidomainProblem::WriteOneStep 2ms 0.0015% 91.15% 742ms 0.56% VecDuplicate 737ms 0.56% 91.71% 737ms 0.56% __memset_avx2_unaligned_erms 0 0% 91.71% 725ms 0.55% PetscMemzero (inline) 0 0% 91.71% 700ms 0.53% AbstractBidomainSolver::FinaliseLinearSystem 231ms 0.18% 91.89% 699ms 0.53% AbstractBidomainSolver::CheckCompatibilityCondition