File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109037ms, 91.81% of 118761ms total Dropped 1124 nodes (cum <= 593.80ms) flat flat% sum% cum cum% 0 0% 0% 118748ms 100% __libc_start_call_main 0 0% 0% 118748ms 100% __libc_start_main_impl 0 0% 0% 118748ms 100% _start 0 0% 0% 118745ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118745ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118745ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118745ms 100% main 0 0% 0% 118709ms 100% AbstractConvergenceTester::Converge 0 0% 0% 118709ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118709ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118709ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118709ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118709ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 5ms 0.0042% 0.0042% 117461ms 98.91% AbstractCardiacProblem::Solve 10ms 0.0084% 0.013% 116707ms 98.27% AbstractDynamicLinearPdeSolver::Solve 1ms 0.00084% 0.013% 65164ms 54.87% LinearSystem::Solve 4ms 0.0034% 0.017% 64696ms 54.48% KSPSolve 8ms 0.0067% 0.024% 64693ms 54.47% KSPSolve_Private 14ms 0.012% 0.035% 64300ms 54.14% KSPSolve_SYMMLQ 197ms 0.17% 0.2% 42727ms 35.98% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.2% 37071ms 31.21% PCApply 4ms 0.0034% 0.21% 37066ms 31.21% PCApply_BJacobi_Singleblock 3ms 0.0025% 0.21% 34646ms 29.17% KSPSolve_PREONLY (partial-inline) 1ms 0.00084% 0.21% 33491ms 28.20% PCApply_ICC 8ms 0.0067% 0.22% 33490ms 28.20% MatSolve 32992ms 27.78% 28.00% 33482ms 28.19% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1402ms 1.18% 29.18% 32812ms 27.63% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 7ms 0.0059% 29.18% 31988ms 26.93% KSP_PCApply.lto_priv.18 6908ms 5.82% 35.00% 28356ms 23.88% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.0051% 35.00% 21864ms 18.41% MatMult 290ms 0.24% 35.25% 21858ms 18.41% MatMult_SeqAIJ (partial-inline) 21353ms 17.98% 53.23% 21858ms 18.41% MatMult_SeqAIJ_Inode (inline) 1982ms 1.67% 54.90% 14638ms 12.33% CardiacNewtonSolver::Solve 343ms 0.29% 55.19% 9136ms 7.69% AbstractCardiacTissue::UpdateCaches (inline) 1994ms 1.68% 56.87% 8596ms 7.24% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4161ms 3.50% 60.37% 8480ms 7.14% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1137ms 0.96% 61.33% 7809ms 6.58% BidomainSolver::SetupLinearSystem 1192ms 1.00% 62.33% 7413ms 6.24% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00084% 62.33% 7131ms 6.00% KSP_PCApply (partial-inline) 9ms 0.0076% 62.34% 6494ms 5.47% KSPConvergedDefault 5977ms 5.03% 67.37% 5977ms 5.03% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3956ms 3.33% 70.70% 3999ms 3.37% __ieee754_log_fma 0 0% 70.70% 3751ms 3.16% boost::numeric::ublas::norm_inf (inline) 2591ms 2.18% 72.88% 3751ms 3.16% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.88% 3751ms 3.16% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.88% 3751ms 3.16% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 8ms 0.0067% 72.89% 3343ms 2.81% MatNullSpaceRemove 23ms 0.019% 72.91% 3227ms 2.72% std::pow (inline) 384ms 0.32% 73.23% 3199ms 2.69% __pow 3023ms 2.55% 75.78% 3023ms 2.55% __memcpy_avx_unaligned_erms 0 0% 75.78% 2970ms 2.50% PetscMemcpy (inline) 1758ms 1.48% 77.26% 2894ms 2.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 374ms 0.31% 77.57% 2805ms 2.36% __ieee754_pow_fma 2561ms 2.16% 79.73% 2561ms 2.16% ddot_ 20ms 0.017% 79.75% 2513ms 2.12% VecCopy 1ms 0.00084% 79.75% 2489ms 2.10% VecCopy_Seq (partial-inline) 10ms 0.0084% 79.76% 2268ms 1.91% VecAXPY 6ms 0.0051% 79.76% 2258ms 1.90% VecAXPY_Seq 2231ms 1.88% 81.64% 2231ms 1.88% daxpy_ 0 0% 81.64% 2060ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 5ms 0.0042% 81.64% 2044ms 1.72% VecDot 0 0% 81.64% 2039ms 1.72% VecDot_Seq 3ms 0.0025% 81.65% 2039ms 1.72% VecXDot_Seq_Private.constprop.0 4ms 0.0034% 81.65% 1873ms 1.58% VecMDot 15ms 0.013% 81.66% 1869ms 1.57% VecMXDot_Private 1836ms 1.55% 83.21% 1846ms 1.55% VecMDot_Seq 48ms 0.04% 83.25% 1719ms 1.45% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1636ms 1.38% 84.63% 1696ms 1.43% exp_inline (inline) 8ms 0.0067% 84.63% 1462ms 1.23% VecMAXPY 1448ms 1.22% 85.85% 1454ms 1.22% VecMAXPY_Seq 1416ms 1.19% 87.05% 1416ms 1.19% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 87.05% 1411ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 12ms 0.01% 87.06% 1110ms 0.93% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.06% 1099ms 0.93% CuboidMeshConstructor::Construct 0 0% 87.06% 1098ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 87.06% 1098ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 209ms 0.18% 87.23% 1095ms 0.92% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.23% 1082ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.23% 1082ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.23% 1082ms 0.91% boost_numeric_ublas_abs (inline) 1082ms 0.91% 88.14% 1082ms 0.91% std::abs (inline) 1ms 0.00084% 88.15% 1069ms 0.9% KSP_RemoveNullSpace (inline) 779ms 0.66% 88.80% 1049ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1010ms 0.85% 89.65% 1010ms 0.85% __memset_avx2_unaligned_erms 0 0% 89.65% 1000ms 0.84% PetscMemzero (inline) 0 0% 89.65% 998ms 0.84% Element::Element 5ms 0.0042% 89.66% 982ms 0.83% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.66% 942ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 8ms 0.0067% 89.66% 904ms 0.76% BidomainAssembler::ComputeMatrixTerm 1ms 0.00084% 89.66% 862ms 0.73% VecDuplicate 4ms 0.0034% 89.67% 843ms 0.71% VecScale 3ms 0.0025% 89.67% 839ms 0.71% VecScale_Seq 10ms 0.0084% 89.68% 835ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 834ms 0.7% 90.38% 834ms 0.7% dscal_ 819ms 0.69% 91.07% 819ms 0.69% [libchaste_heart.so] 3ms 0.0025% 91.07% 788ms 0.66% VecNorm 0 0% 91.07% 778ms 0.66% VecNorm_Seq 8ms 0.0067% 91.08% 711ms 0.6% PetscMallocA 0 0% 91.08% 705ms 0.59% AbstractBidomainSolver::FinaliseLinearSystem 165ms 0.14% 91.22% 703ms 0.59% AbstractBidomainSolver::CheckCompatibilityCondition 4ms 0.0034% 91.22% 703ms 0.59% PetscMallocAlign (partial-inline) 700ms 0.59% 91.81% 700ms 0.59% log_inline (inline) 0 0% 91.81% 686ms 0.58% BidomainProblem::WriteOneStep 0 0% 91.81% 649ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.81% 598ms 0.5% boost::numeric::ublas::matrix_slice::operator= (inline)