File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109690ms, 91.73% of 119584ms total Dropped 1186 nodes (cum <= 597.92ms) flat flat% sum% cum cum% 0 0% 0% 119570ms 100% __libc_start_call_main 0 0% 0% 119570ms 100% __libc_start_main_impl 0 0% 0% 119570ms 100% _start 0 0% 0% 119567ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119567ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119567ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119567ms 100% main 0 0% 0% 119529ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119529ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119529ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119529ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119529ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119529ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 5ms 0.0042% 0.0042% 118256ms 98.89% AbstractCardiacProblem::Solve 5ms 0.0042% 0.0084% 117437ms 98.20% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0042% 0.013% 65980ms 55.17% LinearSystem::Solve 3ms 0.0025% 0.015% 65517ms 54.79% KSPSolve 14ms 0.012% 0.027% 65514ms 54.78% KSPSolve_Private 12ms 0.01% 0.037% 65071ms 54.41% KSPSolve_SYMMLQ 216ms 0.18% 0.22% 42705ms 35.71% AbstractCardiacTissue::SolveCellSystems 4ms 0.0033% 0.22% 37010ms 30.95% PCApply 7ms 0.0059% 0.23% 36992ms 30.93% PCApply_BJacobi_Singleblock 6ms 0.005% 0.23% 34185ms 28.59% KSPSolve_PREONLY (partial-inline) 6ms 0.005% 0.24% 33078ms 27.66% PCApply_ICC 11ms 0.0092% 0.25% 33072ms 27.66% MatSolve 32561ms 27.23% 27.47% 33061ms 27.65% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1400ms 1.17% 28.65% 32872ms 27.49% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 5ms 0.0042% 28.65% 31930ms 26.70% KSP_PCApply.lto_priv.18 6960ms 5.82% 34.47% 28466ms 23.80% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 8ms 0.0067% 34.48% 21758ms 18.19% MatMult 227ms 0.19% 34.67% 21750ms 18.19% MatMult_SeqAIJ (partial-inline) 21241ms 17.76% 52.43% 21748ms 18.19% MatMult_SeqAIJ_Inode (inline) 1977ms 1.65% 54.08% 14913ms 12.47% CardiacNewtonSolver::Solve 306ms 0.26% 54.34% 8969ms 7.50% AbstractCardiacTissue::UpdateCaches (inline) 4475ms 3.74% 58.08% 8795ms 7.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1996ms 1.67% 59.75% 8480ms 7.09% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1058ms 0.88% 60.63% 7707ms 6.44% BidomainSolver::SetupLinearSystem 1099ms 0.92% 61.55% 7075ms 5.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.55% 6989ms 5.84% KSP_PCApply (partial-inline) 8ms 0.0067% 61.56% 6409ms 5.36% KSPConvergedDefault 5721ms 4.78% 66.34% 5721ms 4.78% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3993ms 3.34% 69.68% 4030ms 3.37% __ieee754_log_fma 0 0% 69.68% 3712ms 3.10% boost::numeric::ublas::norm_inf (inline) 2471ms 2.07% 71.75% 3712ms 3.10% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.75% 3712ms 3.10% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.75% 3712ms 3.10% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3426ms 2.86% 74.61% 3426ms 2.86% __memcpy_avx_unaligned_erms 0 0% 74.61% 3404ms 2.85% PetscMemcpy (inline) 4ms 0.0033% 74.62% 3304ms 2.76% MatNullSpaceRemove 30ms 0.025% 74.64% 3172ms 2.65% std::pow (inline) 387ms 0.32% 74.97% 3136ms 2.62% __pow 18ms 0.015% 74.98% 2947ms 2.46% VecCopy 5ms 0.0042% 74.98% 2923ms 2.44% VecCopy_Seq (partial-inline) 1740ms 1.46% 76.44% 2831ms 2.37% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 333ms 0.28% 76.72% 2737ms 2.29% __ieee754_pow_fma 2703ms 2.26% 78.98% 2703ms 2.26% ddot_ 19ms 0.016% 78.99% 2700ms 2.26% VecAXPY 3ms 0.0025% 79.00% 2681ms 2.24% VecAXPY_Seq 2659ms 2.22% 81.22% 2659ms 2.22% daxpy_ 9ms 0.0075% 81.23% 2172ms 1.82% VecDot 0 0% 81.23% 2163ms 1.81% VecDot_Seq 1ms 0.00084% 81.23% 2163ms 1.81% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.23% 2074ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.23% 1962ms 1.64% VecMDot 11ms 0.0092% 81.24% 1962ms 1.64% VecMXDot_Private 1938ms 1.62% 82.86% 1946ms 1.63% VecMDot_Seq 30ms 0.025% 82.89% 1713ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1580ms 1.32% 84.21% 1653ms 1.38% exp_inline (inline) 1552ms 1.30% 85.50% 1552ms 1.30% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.50% 1423ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 3ms 0.0025% 85.51% 1338ms 1.12% VecMAXPY 1333ms 1.11% 86.62% 1335ms 1.12% VecMAXPY_Seq 1319ms 1.10% 87.72% 1319ms 1.10% __memset_avx2_unaligned_erms 0 0% 87.72% 1313ms 1.10% PetscMemzero (inline) 0 0% 87.72% 1155ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.72% 1155ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.72% 1155ms 0.97% boost_numeric_ublas_abs (inline) 1155ms 0.97% 88.69% 1155ms 0.97% std::abs (inline) 8ms 0.0067% 88.70% 1121ms 0.94% boost::numeric::ublas::matrix_assign (inline) 0 0% 88.70% 1119ms 0.94% CuboidMeshConstructor::Construct 0 0% 88.70% 1118ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 88.70% 1118ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 222ms 0.19% 88.88% 1110ms 0.93% boost::numeric::ublas::indexing_matrix_assign 3ms 0.0025% 88.89% 1099ms 0.92% VecDuplicate 787ms 0.66% 89.55% 1049ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00084% 89.55% 1008ms 0.84% Element::Element 4ms 0.0033% 89.55% 985ms 0.82% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00084% 89.55% 985ms 0.82% KSP_RemoveNullSpace (inline) 2ms 0.0017% 89.55% 935ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 9ms 0.0075% 89.56% 922ms 0.77% PetscMallocA 6ms 0.005% 89.56% 913ms 0.76% PetscMallocAlign (partial-inline) 7ms 0.0059% 89.57% 875ms 0.73% BidomainAssembler::ComputeMatrixTerm 6ms 0.005% 89.58% 835ms 0.7% VecScale 0 0% 89.58% 829ms 0.69% VecScale_Seq 827ms 0.69% 90.27% 827ms 0.69% dscal_ 7ms 0.0059% 90.27% 821ms 0.69% boost::numeric::ublas::c_matrix::c_matrix (inline) 800ms 0.67% 90.94% 800ms 0.67% [libchaste_heart.so] 4ms 0.0033% 90.95% 774ms 0.65% VecNorm 3ms 0.0025% 90.95% 765ms 0.64% VecNorm_Seq 0 0% 90.95% 762ms 0.64% BidomainProblem::WriteOneStep 7ms 0.0059% 90.95% 746ms 0.62% VecDuplicate_Seq 3ms 0.0025% 90.96% 733ms 0.61% AbstractBidomainSolver::FinaliseLinearSystem 209ms 0.17% 91.13% 727ms 0.61% AbstractBidomainSolver::CheckCompatibilityCondition 709ms 0.59% 91.72% 709ms 0.59% log_inline (inline) 0 0% 91.72% 651ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 2ms 0.0017% 91.73% 648ms 0.54% VecSetType 1ms 0.00084% 91.73% 620ms 0.52% VecCreate_Seq