File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 112848ms, 91.83% of 122888ms total Dropped 1145 nodes (cum <= 614.44ms) flat flat% sum% cum cum% 0 0% 0% 122876ms 100% __libc_start_call_main 0 0% 0% 122876ms 100% __libc_start_main_impl 0 0% 0% 122876ms 100% _start 0 0% 0% 122873ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 122873ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 122873ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 122873ms 100% main 0 0% 0% 122833ms 100% AbstractConvergenceTester::Converge 0 0% 0% 122833ms 100% CxxTest::RealTestDescription::run 0 0% 0% 122833ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 122833ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 122833ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 122833ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0024% 0.0024% 121559ms 98.92% AbstractCardiacProblem::Solve 12ms 0.0098% 0.012% 120677ms 98.20% AbstractDynamicLinearPdeSolver::Solve 9ms 0.0073% 0.02% 68809ms 55.99% LinearSystem::Solve 0 0% 0.02% 68214ms 55.51% KSPSolve 13ms 0.011% 0.03% 68214ms 55.51% KSPSolve_Private 7ms 0.0057% 0.036% 67782ms 55.16% KSPSolve_SYMMLQ 203ms 0.17% 0.2% 42824ms 34.85% AbstractCardiacTissue::SolveCellSystems 8ms 0.0065% 0.21% 37581ms 30.58% PCApply 3ms 0.0024% 0.21% 37562ms 30.57% PCApply_BJacobi_Singleblock 1ms 0.00081% 0.21% 34535ms 28.10% KSPSolve_PREONLY (partial-inline) 6ms 0.0049% 0.22% 33263ms 27.07% PCApply_ICC 6ms 0.0049% 0.22% 33257ms 27.06% MatSolve 32760ms 26.66% 26.88% 33251ms 27.06% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1383ms 1.13% 28.00% 33142ms 26.97% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0024% 28.01% 32648ms 26.57% KSP_PCApply.lto_priv.18 6892ms 5.61% 33.62% 28366ms 23.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 16ms 0.013% 33.63% 23821ms 19.38% MatMult 292ms 0.24% 33.87% 23805ms 19.37% MatMult_SeqAIJ (partial-inline) 23275ms 18.94% 52.81% 23805ms 19.37% MatMult_SeqAIJ_Inode (inline) 1892ms 1.54% 54.35% 14586ms 11.87% CardiacNewtonSolver::Solve 182ms 0.15% 54.49% 8831ms 7.19% AbstractCardiacTissue::UpdateCaches (inline) 4393ms 3.57% 58.07% 8567ms 6.97% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1992ms 1.62% 59.69% 8431ms 6.86% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1055ms 0.86% 60.55% 8038ms 6.54% BidomainSolver::SetupLinearSystem 1144ms 0.93% 61.48% 7456ms 6.07% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 3ms 0.0024% 61.48% 7143ms 5.81% KSP_PCApply (partial-inline) 11ms 0.009% 61.49% 6455ms 5.25% KSPConvergedDefault 6048ms 4.92% 66.41% 6048ms 4.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3838ms 3.12% 69.53% 3877ms 3.15% __ieee754_log_fma 0 0% 69.53% 3726ms 3.03% boost::numeric::ublas::norm_inf (inline) 2504ms 2.04% 71.57% 3726ms 3.03% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.57% 3726ms 3.03% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.57% 3726ms 3.03% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 10ms 0.0081% 71.58% 3696ms 3.01% MatNullSpaceRemove 3571ms 2.91% 74.49% 3571ms 2.91% __memcpy_avx_unaligned_erms 0 0% 74.49% 3529ms 2.87% PetscMemcpy (inline) 1983ms 1.61% 76.10% 3215ms 2.62% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 18ms 0.015% 76.11% 3102ms 2.52% std::pow (inline) 398ms 0.32% 76.44% 3082ms 2.51% __pow 20ms 0.016% 76.45% 3075ms 2.50% VecCopy 3ms 0.0024% 76.46% 3052ms 2.48% VecCopy_Seq (partial-inline) 2865ms 2.33% 78.79% 2865ms 2.33% ddot_ 22ms 0.018% 78.81% 2783ms 2.26% VecAXPY 6ms 0.0049% 78.81% 2761ms 2.25% VecAXPY_Seq 2738ms 2.23% 81.04% 2738ms 2.23% daxpy_ 394ms 0.32% 81.36% 2676ms 2.18% __ieee754_pow_fma 3ms 0.0024% 81.36% 2360ms 1.92% VecDot 1ms 0.00081% 81.36% 2357ms 1.92% VecDot_Seq 4ms 0.0033% 81.37% 2356ms 1.92% VecXDot_Seq_Private.constprop.0 7ms 0.0057% 81.37% 2096ms 1.71% VecMDot 9ms 0.0073% 81.38% 2089ms 1.70% VecMXDot_Private 3ms 0.0024% 81.38% 2077ms 1.69% AbstractFeVolumeIntegralAssembler::DoAssemble 2070ms 1.68% 83.07% 2076ms 1.69% VecMDot_Seq 25ms 0.02% 83.09% 1712ms 1.39% AbstractFeVolumeIntegralAssembler::AssembleOnElement 5ms 0.0041% 83.09% 1590ms 1.29% VecMAXPY 1580ms 1.29% 84.38% 1585ms 1.29% VecMAXPY_Seq 1497ms 1.22% 85.60% 1562ms 1.27% exp_inline (inline) 1456ms 1.18% 86.78% 1456ms 1.18% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.78% 1425ms 1.16% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1348ms 1.10% 87.88% 1348ms 1.10% __memset_avx2_unaligned_erms 0 0% 87.88% 1141ms 0.93% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.88% 1141ms 0.93% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.88% 1141ms 0.93% boost_numeric_ublas_abs (inline) 1141ms 0.93% 88.81% 1141ms 0.93% std::abs (inline) 2ms 0.0016% 88.81% 1134ms 0.92% VecDuplicate 0 0% 88.81% 1112ms 0.9% CuboidMeshConstructor::Construct 0 0% 88.81% 1111ms 0.9% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00081% 88.81% 1111ms 0.9% DistributedTetrahedralMesh::ConstructCuboid 8ms 0.0065% 88.81% 1083ms 0.88% boost::numeric::ublas::matrix_assign (inline) 803ms 0.65% 89.47% 1074ms 0.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 220ms 0.18% 89.65% 1071ms 0.87% boost::numeric::ublas::indexing_matrix_assign 1ms 0.00081% 89.65% 1003ms 0.82% Element::Element 4ms 0.0033% 89.65% 1001ms 0.81% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00081% 89.65% 946ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 11ms 0.009% 89.66% 932ms 0.76% PetscMallocA 5ms 0.0041% 89.66% 921ms 0.75% PetscMallocAlign 9ms 0.0073% 89.67% 917ms 0.75% VecScale 6ms 0.0049% 89.68% 908ms 0.74% VecScale_Seq 897ms 0.73% 90.41% 897ms 0.73% dscal_ 855ms 0.7% 91.10% 855ms 0.7% [libchaste_heart.so] 5ms 0.0041% 91.11% 844ms 0.69% BidomainAssembler::ComputeMatrixTerm 3ms 0.0024% 91.11% 818ms 0.67% VecNorm 4ms 0.0033% 91.11% 812ms 0.66% boost::numeric::ublas::c_matrix::c_matrix (inline) 1ms 0.00081% 91.11% 811ms 0.66% BidomainProblem::WriteOneStep 0 0% 91.11% 804ms 0.65% VecNorm_Seq 1ms 0.00081% 91.11% 757ms 0.62% VecDuplicate_Seq 7ms 0.0057% 91.12% 681ms 0.55% VecSetType 680ms 0.55% 91.67% 680ms 0.55% log_inline (inline) 1ms 0.00081% 91.67% 662ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 190ms 0.15% 91.83% 660ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.83% 652ms 0.53% AbstractFeAssemblerInterface::Assemble (inline) 2ms 0.0016% 91.83% 631ms 0.51% VecCreate_Seq