File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 111458ms, 91.92% of 121253ms total Dropped 1177 nodes (cum <= 606.26ms) flat flat% sum% cum cum% 0 0% 0% 121238ms 100% __libc_start_call_main 0 0% 0% 121238ms 100% __libc_start_main_impl 0 0% 0% 121238ms 100% _start 0 0% 0% 121235ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 121235ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 121235ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 121235ms 100% main 0 0% 0% 121199ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 121198ms 100% AbstractConvergenceTester::Converge 0 0% 0% 121198ms 100% CxxTest::RealTestDescription::run 0 0% 0% 121198ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 121198ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 121198ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 8ms 0.0066% 0.0066% 119917ms 98.90% AbstractCardiacProblem::Solve 9ms 0.0074% 0.014% 119080ms 98.21% AbstractDynamicLinearPdeSolver::Solve 2ms 0.0016% 0.016% 67358ms 55.55% LinearSystem::Solve 2ms 0.0016% 0.017% 66828ms 55.11% KSPSolve 14ms 0.012% 0.029% 66826ms 55.11% KSPSolve_Private 7ms 0.0058% 0.035% 66408ms 54.77% KSPSolve_SYMMLQ 194ms 0.16% 0.19% 42746ms 35.25% AbstractCardiacTissue::SolveCellSystems 7ms 0.0058% 0.2% 37186ms 30.67% PCApply 8ms 0.0066% 0.21% 37173ms 30.66% PCApply_BJacobi_Singleblock 1ms 0.00082% 0.21% 34509ms 28.46% KSPSolve_PREONLY (partial-inline) 1ms 0.00082% 0.21% 33329ms 27.49% PCApply_ICC 1ms 0.00082% 0.21% 33328ms 27.49% MatSolve 32828ms 27.07% 27.28% 33327ms 27.49% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1355ms 1.12% 28.40% 32888ms 27.12% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 6ms 0.0049% 28.41% 32123ms 26.49% KSP_PCApply.lto_priv.18 7098ms 5.85% 34.26% 28460ms 23.47% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 9ms 0.0074% 34.27% 23102ms 19.05% MatMult 275ms 0.23% 34.49% 23093ms 19.05% MatMult_SeqAIJ (partial-inline) 22586ms 18.63% 53.12% 23090ms 19.04% MatMult_SeqAIJ_Inode (inline) 2016ms 1.66% 54.78% 14774ms 12.18% CardiacNewtonSolver::Solve 300ms 0.25% 55.03% 9013ms 7.43% AbstractCardiacTissue::UpdateCaches (inline) 4377ms 3.61% 58.64% 8746ms 7.21% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1927ms 1.59% 60.23% 8521ms 7.03% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1108ms 0.91% 61.14% 7958ms 6.56% BidomainSolver::SetupLinearSystem 957ms 0.79% 61.93% 7134ms 5.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0016% 61.93% 7093ms 5.85% KSP_PCApply (partial-inline) 5ms 0.0041% 61.94% 6488ms 5.35% KSPConvergedDefault 5925ms 4.89% 66.83% 5925ms 4.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 4047ms 3.34% 70.16% 4096ms 3.38% __ieee754_log_fma 0 0% 70.16% 3600ms 2.97% boost::numeric::ublas::norm_inf (inline) 2446ms 2.02% 72.18% 3600ms 2.97% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.18% 3600ms 2.97% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.18% 3600ms 2.97% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0058% 72.19% 3379ms 2.79% MatNullSpaceRemove 3367ms 2.78% 74.96% 3367ms 2.78% __memcpy_avx_unaligned_erms 0 0% 74.96% 3327ms 2.74% PetscMemcpy (inline) 24ms 0.02% 74.98% 3155ms 2.60% std::pow (inline) 385ms 0.32% 75.30% 3127ms 2.58% __pow 1758ms 1.45% 76.75% 2927ms 2.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2866ms 2.36% 79.11% 2866ms 2.36% ddot_ 23ms 0.019% 79.13% 2861ms 2.36% VecCopy 7ms 0.0058% 79.14% 2838ms 2.34% VecCopy_Seq (partial-inline) 341ms 0.28% 79.42% 2732ms 2.25% __ieee754_pow_fma 19ms 0.016% 79.44% 2621ms 2.16% VecAXPY 6ms 0.0049% 79.44% 2602ms 2.15% VecAXPY_Seq 2587ms 2.13% 81.57% 2587ms 2.13% daxpy_ 5ms 0.0041% 81.58% 2356ms 1.94% VecDot 0 0% 81.58% 2351ms 1.94% VecDot_Seq 0 0% 81.58% 2351ms 1.94% VecXDot_Seq_Private.constprop.0 1ms 0.00082% 81.58% 2086ms 1.72% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.58% 1935ms 1.60% VecMDot 11ms 0.0091% 81.59% 1935ms 1.60% VecMXDot_Private 1916ms 1.58% 83.17% 1924ms 1.59% VecMDot_Seq 25ms 0.021% 83.19% 1709ms 1.41% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1592ms 1.31% 84.50% 1651ms 1.36% exp_inline (inline) 1536ms 1.27% 85.77% 1536ms 1.27% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 7ms 0.0058% 85.77% 1437ms 1.19% VecMAXPY 1426ms 1.18% 86.95% 1430ms 1.18% VecMAXPY_Seq 0 0% 86.95% 1427ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1272ms 1.05% 88.00% 1272ms 1.05% __memset_avx2_unaligned_erms 0 0% 88.00% 1265ms 1.04% PetscMemzero (inline) 0 0% 88.00% 1122ms 0.93% CuboidMeshConstructor::Construct 8ms 0.0066% 88.01% 1122ms 0.93% boost::numeric::ublas::matrix_assign (inline) 0 0% 88.01% 1121ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.01% 1121ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 209ms 0.17% 88.18% 1111ms 0.92% boost::numeric::ublas::indexing_matrix_assign 2ms 0.0016% 88.18% 1070ms 0.88% KSP_RemoveNullSpace (inline) 0 0% 88.18% 1060ms 0.87% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.18% 1060ms 0.87% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.18% 1060ms 0.87% boost_numeric_ublas_abs (inline) 1060ms 0.87% 89.05% 1060ms 0.87% std::abs (inline) 788ms 0.65% 89.70% 1045ms 0.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 3ms 0.0025% 89.71% 1039ms 0.86% VecDuplicate 1ms 0.00082% 89.71% 1016ms 0.84% Element::Element 6ms 0.0049% 89.71% 1004ms 0.83% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00082% 89.71% 954ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 904ms 0.75% 90.46% 904ms 0.75% [libchaste_heart.so] 7ms 0.0058% 90.46% 881ms 0.73% BidomainAssembler::ComputeMatrixTerm 11ms 0.0091% 90.47% 863ms 0.71% PetscMallocA 10ms 0.0082% 90.48% 852ms 0.7% PetscMallocAlign (partial-inline) 3ms 0.0025% 90.48% 845ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 15ms 0.012% 90.50% 821ms 0.68% VecScale 3ms 0.0025% 90.50% 806ms 0.66% VecScale_Seq 802ms 0.66% 91.16% 802ms 0.66% dscal_ 2ms 0.0016% 91.16% 777ms 0.64% BidomainProblem::WriteOneStep 3ms 0.0025% 91.16% 777ms 0.64% VecNorm 1ms 0.00082% 91.17% 767ms 0.63% VecNorm_Seq 702ms 0.58% 91.74% 702ms 0.58% log_inline (inline) 1ms 0.00082% 91.75% 685ms 0.56% AbstractBidomainSolver::FinaliseLinearSystem 212ms 0.17% 91.92% 683ms 0.56% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.92% 659ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 2ms 0.0016% 91.92% 632ms 0.52% VecDuplicate_Seq