File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 4001ms, 88.52% of 4520ms total Dropped 455 nodes (cum <= 22.60ms) flat flat% sum% cum cum% 0 0% 0% 4511ms 99.80% __libc_start_call_main 0 0% 0% 4511ms 99.80% __libc_start_main_impl 0 0% 0% 4511ms 99.80% _start 0 0% 0% 4508ms 99.73% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4508ms 99.73% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4508ms 99.73% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4508ms 99.73% main 0 0% 0% 4473ms 98.96% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4473ms 98.96% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4473ms 98.96% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.022% 0.022% 4467ms 98.83% AbstractCardiacProblem::Solve 2ms 0.044% 0.066% 4457ms 98.61% AbstractDynamicLinearPdeSolver::Solve 28ms 0.62% 0.69% 2424ms 53.63% AbstractCardiacTissue::SolveCellSystems 1ms 0.022% 0.71% 1684ms 37.26% LinearSystem::Solve 0 0% 0.71% 1618ms 35.80% KSPSolve 3ms 0.066% 0.77% 1618ms 35.80% KSPSolve_Private 2ms 0.044% 0.82% 1565ms 34.62% KSPSolve_SYMMLQ 56ms 1.24% 2.06% 1363ms 30.15% AbstractCardiacCell::ComputeExceptVoltage 22ms 0.49% 2.54% 1051ms 23.25% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.044% 2.59% 978ms 21.64% PCApply 0 0% 2.59% 974ms 21.55% PCApply_BJacobi_Singleblock 50ms 1.11% 3.69% 889ms 19.67% EulerIvpOdeSolver::CalculateNextYValue 220ms 4.87% 8.56% 829ms 18.34% CellLuoRudy1991FromCellML::EvaluateYDerivatives 90ms 1.99% 10.55% 811ms 17.94% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.022% 10.58% 803ms 17.77% KSPSolve_PREONLY (partial-inline) 338ms 7.48% 18.05% 759ms 16.79% __GI___exp 4ms 0.088% 18.14% 754ms 16.68% MatSolve 0 0% 18.14% 754ms 16.68% PCApply_ICC 743ms 16.44% 34.58% 745ms 16.48% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 34.58% 728ms 16.11% KSP_PCApply.lto_priv.18 245ms 5.42% 40.00% 683ms 15.11% CellLuoRudy1991FromCellML::GetIIonic 7ms 0.15% 40.15% 484ms 10.71% MatMult 27ms 0.6% 40.75% 473ms 10.46% MatMult_SeqAIJ 443ms 9.80% 50.55% 449ms 9.93% MatMult_SeqAIJ_Inode (inline) 379ms 8.38% 58.94% 400ms 8.85% __ieee754_exp_fma 1ms 0.022% 58.96% 346ms 7.65% KSPConvergedDefault 0 0% 58.96% 325ms 7.19% KSP_PCApply (partial-inline) 48ms 1.06% 60.02% 299ms 6.62% BidomainSolver::SetupLinearSystem 1ms 0.022% 60.04% 222ms 4.91% std::pow (inline) 24ms 0.53% 60.58% 221ms 4.89% __pow 25ms 0.55% 61.13% 196ms 4.34% __ieee754_pow_fma 89ms 1.97% 63.10% 176ms 3.89% CellLuoRudy1991FromCellML::VerifyStateVariables 3ms 0.066% 63.16% 119ms 2.63% MatNullSpaceRemove 0 0% 63.16% 112ms 2.48% VecDuplicate 21ms 0.46% 63.63% 94ms 2.08% MPI_Wtime 87ms 1.92% 65.55% 87ms 1.92% log_inline (inline) 71ms 1.57% 67.12% 83ms 1.84% AbstractCardiacCell::GetVoltage (partial-inline) 82ms 1.81% 68.94% 82ms 1.81% exp_inline (inline) 16ms 0.35% 69.29% 76ms 1.68% PetscLogEventEndDefault 0 0% 69.29% 72ms 1.59% VecMDot 6ms 0.13% 69.42% 72ms 1.59% VecMXDot_Private 3ms 0.066% 69.49% 72ms 1.59% __GI___clock_gettime 69ms 1.53% 71.02% 69ms 1.53% [[vdso]] 68ms 1.50% 72.52% 68ms 1.50% ddot_ 1ms 0.022% 72.54% 67ms 1.48% VecDuplicate_MPI 2ms 0.044% 72.59% 65ms 1.44% VecDestroy 4ms 0.088% 72.68% 63ms 1.39% VecAXPY 23ms 0.51% 73.19% 61ms 1.35% TimeStepper::TimeStepper 2ms 0.044% 73.23% 56ms 1.24% PetscMallocA 6ms 0.13% 73.36% 56ms 1.24% VecCopy 10ms 0.22% 73.58% 54ms 1.19% PetscLogEventBeginDefault 6ms 0.13% 73.72% 54ms 1.19% PetscMallocAlign (partial-inline) 2ms 0.044% 73.76% 53ms 1.17% VecDot 50ms 1.11% 74.87% 50ms 1.11% __ieee754_log_fma 12ms 0.27% 75.13% 48ms 1.06% AbstractCardiacCell::SetVoltage (partial-inline) 48ms 1.06% 76.19% 48ms 1.06% TimeStepper::CalculateNextTime 0 0% 76.19% 48ms 1.06% VecNorm 41ms 0.91% 77.10% 47ms 1.04% AbstractOneStepIvpOdeSolver::Solve 2ms 0.044% 77.15% 47ms 1.04% VecCreate 1ms 0.022% 77.17% 46ms 1.02% VecAXPY_Seq 0 0% 77.17% 46ms 1.02% VecDot_Seq 42ms 0.93% 78.10% 46ms 1.02% VecMDot_Seq 1ms 0.022% 78.12% 46ms 1.02% VecXDot_Seq_Private.constprop.0 2ms 0.044% 78.16% 45ms 1% VecDuplicate_Seq 40ms 0.88% 79.05% 45ms 1% std::__cxx11::basic_string::basic_string 2ms 0.044% 79.09% 44ms 0.97% VecMAXPY 43ms 0.95% 80.04% 43ms 0.95% daxpy_ 15ms 0.33% 80.38% 42ms 0.93% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.38% 42ms 0.93% AbstractBidomainSolver::FinaliseLinearSystem 34ms 0.75% 81.13% 41ms 0.91% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 24ms 0.53% 81.66% 40ms 0.88% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 81.66% 40ms 0.88% VecNorm_Seq 38ms 0.84% 82.50% 38ms 0.84% __memcpy_avx_unaligned_erms 3ms 0.066% 82.57% 35ms 0.77% VecCreate_MPI_Private 30ms 0.66% 83.23% 34ms 0.75% AbstractParameterisedSystem::SetAnyVariable 33ms 0.73% 83.96% 33ms 0.73% boost::shared_ptr::operator-> (inline) 0 0% 83.96% 31ms 0.69% CxxTest::RealWorldDescription::setUp 0 0% 83.96% 31ms 0.69% PMPI_Init_thread 0 0% 83.96% 31ms 0.69% PetscInitialize 0 0% 83.96% 31ms 0.69% PetscSetup::setUpWorld 0 0% 83.96% 31ms 0.69% PetscSetupUtils::CommonSetup 0 0% 83.96% 31ms 0.69% PetscSetupUtils::InitialisePetsc 31ms 0.69% 84.65% 31ms 0.69% RegularStimulus::GetStimulus 0 0% 84.65% 31ms 0.69% ompi_mpi_init 30ms 0.66% 85.31% 30ms 0.66% DistributedVector::Iterator::operator!= 3ms 0.066% 85.38% 30ms 0.66% PetscHeaderDestroy_Private 0 0% 85.38% 30ms 0.66% VecNorm_MPI 0 0% 85.38% 30ms 0.66% VecNorm_MPI_Default.constprop.0 0 0% 85.38% 29ms 0.64% PetscMemcpy (inline) 0 0% 85.38% 27ms 0.6% PetscMemzero (inline) 2ms 0.044% 85.42% 27ms 0.6% __posix_memalign 27ms 0.6% 86.02% 27ms 0.6% std::isinf (inline) 26ms 0.58% 86.59% 26ms 0.58% [libchaste_heart.so] 6ms 0.13% 86.73% 26ms 0.58% __GI___libc_malloc 26ms 0.58% 87.30% 26ms 0.58% __memset_avx2_unaligned_erms 12ms 0.27% 87.57% 25ms 0.55% TimeStepper::AdvanceOneTimeStep 1ms 0.022% 87.59% 25ms 0.55% VecSetType 2ms 0.044% 87.63% 24ms 0.53% 1ms 0.022% 87.65% 24ms 0.53% VecCopy_Seq (partial-inline) 18ms 0.4% 88.05% 23ms 0.51% AbstractParameterisedSystem::GetAnyVariable 21ms 0.46% 88.52% 23ms 0.51% VecMAXPY_Seq