File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 114272ms, 91.76% of 124540ms total Dropped 1159 nodes (cum <= 622.70ms) flat flat% sum% cum cum% 0 0% 0% 124526ms 100% __libc_start_call_main 0 0% 0% 124526ms 100% __libc_start_main_impl 0 0% 0% 124526ms 100% _start 0 0% 0% 124523ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 124523ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 124523ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 124523ms 100% main 0 0% 0% 124484ms 100% CxxTest::RealTestDescription::run 0 0% 0% 124484ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 124484ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 124484ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 124484ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 124483ms 100% AbstractConvergenceTester::Converge 6ms 0.0048% 0.0048% 123168ms 98.90% AbstractCardiacProblem::Solve 8ms 0.0064% 0.011% 122245ms 98.16% AbstractDynamicLinearPdeSolver::Solve 6ms 0.0048% 0.016% 69998ms 56.21% LinearSystem::Solve 0 0% 0.016% 69383ms 55.71% KSPSolve 13ms 0.01% 0.026% 69383ms 55.71% KSPSolve_Private 13ms 0.01% 0.037% 68910ms 55.33% KSPSolve_SYMMLQ 233ms 0.19% 0.22% 43094ms 34.60% AbstractCardiacTissue::SolveCellSystems 5ms 0.004% 0.23% 38262ms 30.72% PCApply 9ms 0.0072% 0.24% 38251ms 30.71% PCApply_BJacobi_Singleblock 1ms 0.0008% 0.24% 35297ms 28.34% KSPSolve_PREONLY (partial-inline) 2ms 0.0016% 0.24% 34125ms 27.40% PCApply_ICC 7ms 0.0056% 0.24% 34123ms 27.40% MatSolve 33624ms 27.00% 27.24% 34116ms 27.39% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1410ms 1.13% 28.37% 33185ms 26.65% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0016% 28.38% 33005ms 26.50% KSP_PCApply.lto_priv.18 6927ms 5.56% 33.94% 28721ms 23.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 13ms 0.01% 33.95% 24166ms 19.40% MatMult 199ms 0.16% 34.11% 24153ms 19.39% MatMult_SeqAIJ (partial-inline) 23646ms 18.99% 53.09% 24151ms 19.39% MatMult_SeqAIJ_Inode (inline) 2021ms 1.62% 54.72% 14694ms 11.80% CardiacNewtonSolver::Solve 323ms 0.26% 54.98% 9027ms 7.25% AbstractCardiacTissue::UpdateCaches (inline) 4404ms 3.54% 58.51% 8567ms 6.88% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1916ms 1.54% 60.05% 8483ms 6.81% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1091ms 0.88% 60.93% 8089ms 6.50% BidomainSolver::SetupLinearSystem 1202ms 0.97% 61.89% 7749ms 6.22% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.0008% 61.89% 7296ms 5.86% KSP_PCApply (partial-inline) 7ms 0.0056% 61.90% 6677ms 5.36% KSPConvergedDefault 6269ms 5.03% 66.93% 6269ms 5.03% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3882ms 3.12% 70.05% 3921ms 3.15% __ieee754_log_fma 0 0% 70.05% 3728ms 2.99% boost::numeric::ublas::norm_inf (inline) 2532ms 2.03% 72.08% 3728ms 2.99% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.08% 3728ms 2.99% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.08% 3728ms 2.99% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3699ms 2.97% 75.05% 3699ms 2.97% __memcpy_avx_unaligned_erms 0 0% 75.05% 3666ms 2.94% PetscMemcpy (inline) 9ms 0.0072% 75.06% 3451ms 2.77% MatNullSpaceRemove 23ms 0.018% 75.08% 3217ms 2.58% VecCopy 4ms 0.0032% 75.08% 3191ms 2.56% VecCopy_Seq (partial-inline) 19ms 0.015% 75.10% 3156ms 2.53% std::pow (inline) 399ms 0.32% 75.42% 3134ms 2.52% __pow 1722ms 1.38% 76.80% 2899ms 2.33% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2826ms 2.27% 79.07% 2826ms 2.27% ddot_ 18ms 0.014% 79.08% 2789ms 2.24% VecAXPY 8ms 0.0064% 79.09% 2771ms 2.22% VecAXPY_Seq 2750ms 2.21% 81.30% 2750ms 2.21% daxpy_ 371ms 0.3% 81.60% 2721ms 2.18% __ieee754_pow_fma 1ms 0.0008% 81.60% 2324ms 1.87% VecDot 5ms 0.004% 81.60% 2323ms 1.87% VecDot_Seq 1ms 0.0008% 81.60% 2318ms 1.86% VecXDot_Seq_Private.constprop.0 4ms 0.0032% 81.61% 2089ms 1.68% AbstractFeVolumeIntegralAssembler::DoAssemble 4ms 0.0032% 81.61% 2030ms 1.63% VecMDot 11ms 0.0088% 81.62% 2026ms 1.63% VecMXDot_Private 1991ms 1.60% 83.22% 2007ms 1.61% VecMDot_Seq 36ms 0.029% 83.24% 1748ms 1.40% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1575ms 1.26% 84.51% 1646ms 1.32% exp_inline (inline) 0 0% 84.51% 1437ms 1.15% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1430ms 1.15% 85.66% 1430ms 1.15% __memset_avx2_unaligned_erms 0 0% 85.66% 1425ms 1.14% PetscMemzero (inline) 8ms 0.0064% 85.66% 1412ms 1.13% VecMAXPY 1397ms 1.12% 86.79% 1404ms 1.13% VecMAXPY_Seq 1393ms 1.12% 87.90% 1393ms 1.12% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 5ms 0.004% 87.91% 1170ms 0.94% VecDuplicate 0 0% 87.91% 1143ms 0.92% CuboidMeshConstructor::Construct 0 0% 87.91% 1142ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 4ms 0.0032% 87.91% 1142ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 4ms 0.0032% 87.91% 1108ms 0.89% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.91% 1099ms 0.88% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.91% 1099ms 0.88% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.91% 1099ms 0.88% boost_numeric_ublas_abs (inline) 1099ms 0.88% 88.80% 1099ms 0.88% std::abs (inline) 224ms 0.18% 88.98% 1095ms 0.88% boost::numeric::ublas::indexing_matrix_assign 4ms 0.0032% 88.98% 1070ms 0.86% KSP_RemoveNullSpace (inline) 793ms 0.64% 89.62% 1069ms 0.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0016% 89.62% 1040ms 0.84% Element::Element 5ms 0.004% 89.62% 993ms 0.8% AbstractTetrahedralElement::CalculateJacobian 17ms 0.014% 89.64% 982ms 0.79% PetscMallocA 9ms 0.0072% 89.64% 965ms 0.77% PetscMallocAlign (partial-inline) 1ms 0.0008% 89.64% 948ms 0.76% AbstractTetrahedralElement::AbstractTetrahedralElement 4ms 0.0032% 89.65% 876ms 0.7% BidomainAssembler::ComputeMatrixTerm 9ms 0.0072% 89.65% 859ms 0.69% boost::numeric::ublas::c_matrix::c_matrix (inline) 856ms 0.69% 90.34% 856ms 0.69% [libchaste_heart.so] 13ms 0.01% 90.35% 852ms 0.68% VecScale 0 0% 90.35% 846ms 0.68% BidomainProblem::WriteOneStep 7ms 0.0056% 90.36% 839ms 0.67% VecScale_Seq 830ms 0.67% 91.02% 830ms 0.67% dscal_ 2ms 0.0016% 91.03% 806ms 0.65% VecNorm 4ms 0.0032% 91.03% 789ms 0.63% VecNorm_Seq 2ms 0.0016% 91.03% 754ms 0.61% VecDuplicate_Seq 0 0% 91.03% 705ms 0.57% AbstractBidomainSolver::FinaliseLinearSystem 213ms 0.17% 91.20% 703ms 0.56% AbstractBidomainSolver::CheckCompatibilityCondition 675ms 0.54% 91.74% 675ms 0.54% log_inline (inline) 14ms 0.011% 91.76% 658ms 0.53% VecSetType 0 0% 91.76% 652ms 0.52% AbstractFeAssemblerInterface::Assemble (inline)