File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 1925ms, 86.67% of 2221ms total Dropped 357 nodes (cum <= 11.11ms) flat flat% sum% cum cum% 0 0% 0% 2217ms 99.82% __libc_start_call_main 0 0% 0% 2217ms 99.82% __libc_start_main_impl 0 0% 0% 2217ms 99.82% _start 0 0% 0% 2215ms 99.73% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 2215ms 99.73% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 2215ms 99.73% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 2215ms 99.73% main 0 0% 0% 2180ms 98.15% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 2180ms 98.15% CxxTest::TestRunner::runTest (inline) 0 0% 0% 2180ms 98.15% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 2175ms 97.93% AbstractCardiacProblem::Solve 0 0% 0% 2171ms 97.75% AbstractDynamicLinearPdeSolver::Solve 9ms 0.41% 0.41% 1074ms 48.36% AbstractCardiacTissue::SolveCellSystems 0 0% 0.41% 897ms 40.39% LinearSystem::Solve 0 0% 0.41% 885ms 39.85% KSPSolve 1ms 0.045% 0.45% 885ms 39.85% KSPSolve_Private 0 0% 0.45% 874ms 39.35% KSPSolve_SYMMLQ 8ms 0.36% 0.81% 605ms 27.24% AbstractCardiacCell::ComputeExceptVoltage 1ms 0.045% 0.86% 594ms 26.74% PCApply 1ms 0.045% 0.9% 585ms 26.34% PCApply_BJacobi_Singleblock 17ms 0.77% 1.67% 540ms 24.31% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 1.67% 501ms 22.56% KSPSolve_PREONLY (partial-inline) 3ms 0.14% 1.80% 464ms 20.89% MatSolve 0 0% 1.80% 464ms 20.89% PCApply_ICC 459ms 20.67% 22.47% 460ms 20.71% MatSolve_SeqSBAIJ_1_NaturalOrdering 32ms 1.44% 23.91% 458ms 20.62% EulerIvpOdeSolver::CalculateNextYValue 0 0% 23.91% 449ms 20.22% KSP_PCApply.lto_priv.18 127ms 5.72% 29.63% 418ms 18.82% CellLuoRudy1991FromCellML::EvaluateYDerivatives 4ms 0.18% 29.81% 380ms 17.11% AbstractCardiacTissue::UpdateCaches (inline) 141ms 6.35% 36.15% 351ms 15.80% __GI___exp 126ms 5.67% 41.83% 350ms 15.76% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.14% 41.96% 228ms 10.27% MatMult 1ms 0.045% 42.01% 221ms 9.95% MatMult_SeqAIJ 220ms 9.91% 51.91% 221ms 9.95% MatMult_SeqAIJ_Inode (inline) 0 0% 51.91% 195ms 8.78% KSP_PCApply (partial-inline) 170ms 7.65% 59.57% 194ms 8.73% __ieee754_exp_fma 0 0% 59.57% 190ms 8.55% KSPConvergedDefault 29ms 1.31% 60.87% 176ms 7.92% BidomainSolver::SetupLinearSystem 1ms 0.045% 60.92% 126ms 5.67% std::pow (inline) 14ms 0.63% 61.55% 125ms 5.63% __pow 18ms 0.81% 62.36% 111ms 5.00% __ieee754_pow_fma 1ms 0.045% 62.40% 83ms 3.74% MatNullSpaceRemove 6ms 0.27% 62.67% 66ms 2.97% MPI_Wtime 1ms 0.045% 62.72% 60ms 2.70% __GI___clock_gettime 59ms 2.66% 65.38% 59ms 2.66% [[vdso]] 32ms 1.44% 66.82% 57ms 2.57% CellLuoRudy1991FromCellML::VerifyStateVariables 49ms 2.21% 69.02% 53ms 2.39% exp_inline (inline) 0 0% 69.02% 51ms 2.30% VecMDot 1ms 0.045% 69.07% 51ms 2.30% VecMXDot_Private 8ms 0.36% 69.43% 50ms 2.25% PetscLogEventEndDefault 4ms 0.18% 69.61% 43ms 1.94% PetscLogEventBeginDefault 0 0% 69.61% 43ms 1.94% VecDuplicate 38ms 1.71% 71.32% 38ms 1.71% log_inline (inline) 35ms 1.58% 72.90% 37ms 1.67% VecMDot_Seq 0 0% 72.90% 33ms 1.49% CxxTest::RealWorldDescription::setUp 0 0% 72.90% 33ms 1.49% PMPI_Init_thread 0 0% 72.90% 33ms 1.49% PetscInitialize 0 0% 72.90% 33ms 1.49% PetscSetup::setUpWorld 0 0% 72.90% 33ms 1.49% PetscSetupUtils::CommonSetup 0 0% 72.90% 33ms 1.49% PetscSetupUtils::InitialisePetsc 0 0% 72.90% 33ms 1.49% ompi_mpi_init 4ms 0.18% 73.08% 31ms 1.40% VecMAXPY 29ms 1.31% 74.38% 29ms 1.31% [libchaste_heart.so] 0 0% 74.38% 26ms 1.17% 2ms 0.09% 74.47% 26ms 1.17% VecCopy 25ms 1.13% 75.60% 25ms 1.13% ddot_ 23ms 1.04% 76.63% 24ms 1.08% __ieee754_log_fma 0 0% 76.63% 23ms 1.04% VecDuplicate_Seq 1ms 0.045% 76.68% 22ms 0.99% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.045% 76.72% 21ms 0.95% VecAXPY 0 0% 76.72% 21ms 0.95% VecDot 21ms 0.95% 77.67% 21ms 0.95% asuint64 (inline) 10ms 0.45% 78.12% 21ms 0.95% top12 (inline) 20ms 0.9% 79.02% 20ms 0.9% ReplicatableVector::operator[] 14ms 0.63% 79.65% 20ms 0.9% TimeStepper::TimeStepper 0 0% 79.65% 20ms 0.9% VecCreate 2ms 0.09% 79.74% 20ms 0.9% VecDuplicate_MPI 7ms 0.32% 80.05% 19ms 0.86% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.05% 19ms 0.86% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 80.05% 19ms 0.86% orte_init 9ms 0.41% 80.46% 17ms 0.77% TimeStepper::AdvanceOneTimeStep 0 0% 80.46% 17ms 0.77% VecDestroy 0 0% 80.46% 17ms 0.77% mca_base_framework_open 12ms 0.54% 81.00% 16ms 0.72% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 15ms 0.68% 81.67% 16ms 0.72% AbstractParameterisedSystem::SetAnyVariable 16ms 0.72% 82.40% 16ms 0.72% RegularStimulus::GetStimulus 0 0% 82.40% 16ms 0.72% VecDot_Seq 0 0% 82.40% 16ms 0.72% VecXDot_Seq_Private.constprop.0 16ms 0.72% 83.12% 16ms 0.72% [libm.so.6] 0 0% 83.12% 16ms 0.72% __GI__dl_catch_exception 0 0% 83.12% 16ms 0.72% _dl_catch_error 0 0% 83.12% 16ms 0.72% _dlerror_run 0 0% 83.12% 16ms 0.72% mca_base_framework_register 1ms 0.045% 83.16% 15ms 0.68% PMPI_Comm_get_attr 15ms 0.68% 83.84% 15ms 0.68% PdeSimulationTime::GetPdeTimeStepInverse 0 0% 83.84% 15ms 0.68% VecNorm 0 0% 83.84% 15ms 0.68% ___dlopen 0 0% 83.84% 15ms 0.68% _dl_open 0 0% 83.84% 15ms 0.68% dl_open_worker 0 0% 83.84% 15ms 0.68% dlopen_doit 0 0% 83.84% 15ms 0.68% dlopen_implementation (inline) 0 0% 83.84% 15ms 0.68% mca_base_framework_components_register 0 0% 83.84% 15ms 0.68% opal_stackframe_output 2ms 0.09% 83.93% 14ms 0.63% PetscMallocA 0 0% 83.93% 14ms 0.63% VecScale 0 0% 83.93% 14ms 0.63% mca_base_component_find 0 0% 83.93% 14ms 0.63% mca_base_component_repository_open 3ms 0.14% 84.06% 14ms 0.63% ompi_attr_get_c 6ms 0.27% 84.33% 13ms 0.59% AbstractOneStepIvpOdeSolver::Solve 13ms 0.59% 84.92% 13ms 0.59% DistributedVector::Iterator::operator!= 0 0% 84.92% 13ms 0.59% PetscHeaderCreate_Private 13ms 0.59% 85.50% 13ms 0.59% VecMAXPY_Seq 0 0% 85.50% 12ms 0.54% AbstractFeVolumeIntegralAssembler::DoAssemble 9ms 0.41% 85.91% 12ms 0.54% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 5ms 0.23% 86.13% 12ms 0.54% PetscMallocAlign 0 0% 86.13% 12ms 0.54% PetscMemcpy (inline) 12ms 0.54% 86.67% 12ms 0.54% __memcpy_avx512_unaligned_erms 0 0% 86.67% 12ms 0.54% _dl_init 0 0% 86.67% 12ms 0.54% call_init (inline) 0 0% 86.67% 12ms 0.54% hwloc_topology_load