File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3721ms, 89.00% of 4181ms total Dropped 403 nodes (cum <= 20.91ms) flat flat% sum% cum cum% 0 0% 0% 4173ms 99.81% __libc_start_call_main 0 0% 0% 4173ms 99.81% __libc_start_main_impl 0 0% 0% 4173ms 99.81% _start 0 0% 0% 4171ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4171ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4171ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4171ms 99.76% main 0 0% 0% 4138ms 98.97% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4138ms 98.97% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4138ms 98.97% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 2ms 0.048% 0.048% 4133ms 98.85% AbstractCardiacProblem::Solve 0 0% 0.048% 4122ms 98.59% AbstractDynamicLinearPdeSolver::Solve 16ms 0.38% 0.43% 2095ms 50.11% AbstractCardiacTissue::SolveCellSystems 0 0% 0.43% 1593ms 38.10% LinearSystem::Solve 0 0% 0.43% 1569ms 37.53% KSPSolve 3ms 0.072% 0.5% 1569ms 37.53% KSPSolve_Private 0 0% 0.5% 1536ms 36.74% KSPSolve_SYMMLQ 16ms 0.38% 0.88% 1188ms 28.41% AbstractCardiacCell::ComputeExceptVoltage 20ms 0.48% 1.36% 1065ms 25.47% AbstractOneStepIvpOdeSolver::InternalSolve 107ms 2.56% 3.92% 899ms 21.50% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.048% 3.97% 883ms 21.12% PCApply 1ms 0.024% 3.99% 872ms 20.86% PCApply_BJacobi_Singleblock 284ms 6.79% 10.79% 783ms 18.73% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 10.79% 763ms 18.25% KSPSolve_PREONLY (partial-inline) 26ms 0.62% 11.41% 736ms 17.60% AbstractCardiacTissue::UpdateCaches (inline) 3ms 0.072% 11.48% 725ms 17.34% MatMult 0 0% 11.48% 722ms 17.27% MatSolve 0 0% 11.48% 722ms 17.27% PCApply_ICC 1ms 0.024% 11.50% 713ms 17.05% MatMult_SeqAIJ 706ms 16.89% 28.39% 713ms 17.05% MatMult_SeqAIJ_Inode (inline) 708ms 16.93% 45.32% 712ms 17.03% MatSolve_SeqSBAIJ_1_NaturalOrdering 323ms 7.73% 53.05% 692ms 16.55% CellLuoRudy1991FromCellML::GetIIonic 0 0% 53.05% 629ms 15.04% KSP_PCApply.lto_priv.18 202ms 4.83% 57.88% 570ms 13.63% __GI___exp 41ms 0.98% 58.86% 397ms 9.50% BidomainSolver::SetupLinearSystem 1ms 0.024% 58.89% 334ms 7.99% KSPConvergedDefault 323ms 7.73% 66.61% 325ms 7.77% __ieee754_exp_fma 0 0% 66.61% 320ms 7.65% KSP_PCApply (partial-inline) 4ms 0.096% 66.71% 203ms 4.86% std::pow (inline) 9ms 0.22% 66.92% 198ms 4.74% __pow 11ms 0.26% 67.18% 187ms 4.47% __ieee754_pow_fma 129ms 3.09% 70.27% 129ms 3.09% [libchaste_heart.so] 68ms 1.63% 71.90% 126ms 3.01% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 71.92% 111ms 2.65% MatNullSpaceRemove 90ms 2.15% 74.07% 90ms 2.15% log_inline (inline) 73ms 1.75% 75.82% 83ms 1.99% exp_inline (inline) 31ms 0.74% 76.56% 80ms 1.91% TimeStepper::TimeStepper 13ms 0.31% 76.87% 70ms 1.67% MPI_Wtime 64ms 1.53% 78.40% 64ms 1.53% TimeStepper::CalculateNextTime 0 0% 78.40% 62ms 1.48% VecMDot 4ms 0.096% 78.50% 62ms 1.48% VecMXDot_Private 0 0% 78.50% 58ms 1.39% VecDuplicate 1ms 0.024% 78.52% 56ms 1.34% __GI___clock_gettime 55ms 1.32% 79.84% 55ms 1.32% [[vdso]] 54ms 1.29% 81.13% 54ms 1.29% ddot_ 51ms 1.22% 82.35% 51ms 1.22% [libm.so.6] 6ms 0.14% 82.49% 49ms 1.17% PetscLogEventBeginDefault 1ms 0.024% 82.52% 48ms 1.15% VecMAXPY 6ms 0.14% 82.66% 46ms 1.10% PetscLogEventEndDefault 1ms 0.024% 82.68% 45ms 1.08% VecDestroy 43ms 1.03% 83.71% 45ms 1.08% VecMDot_Seq 0 0% 83.71% 40ms 0.96% VecNorm 4ms 0.096% 83.81% 38ms 0.91% VecAXPY 37ms 0.88% 84.69% 37ms 0.88% VecMAXPY_Seq 1ms 0.024% 84.72% 36ms 0.86% VecDot 18ms 0.43% 85.15% 36ms 0.86% std::__cxx11::basic_string::basic_string 5ms 0.12% 85.27% 33ms 0.79% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 85.27% 33ms 0.79% AbstractBidomainSolver::FinaliseLinearSystem 11ms 0.26% 85.53% 33ms 0.79% AbstractCardiacCell::SetVoltage (partial-inline) 9ms 0.22% 85.75% 33ms 0.79% TimeStepper::AdvanceOneTimeStep 0 0% 85.75% 33ms 0.79% VecDot_Seq 0 0% 85.75% 33ms 0.79% VecXDot_Seq_Private.constprop.0 3ms 0.072% 85.82% 31ms 0.74% VecCopy 0 0% 85.82% 31ms 0.74% VecNorm_Seq 31ms 0.74% 86.56% 31ms 0.74% [libchaste_ode.so] 20ms 0.48% 87.04% 30ms 0.72% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 87.04% 30ms 0.72% CxxTest::RealWorldDescription::setUp 0 0% 87.04% 30ms 0.72% PMPI_Init_thread 0 0% 87.04% 30ms 0.72% PetscInitialize 0 0% 87.04% 30ms 0.72% PetscSetup::setUpWorld 0 0% 87.04% 30ms 0.72% PetscSetupUtils::CommonSetup 0 0% 87.04% 30ms 0.72% PetscSetupUtils::InitialisePetsc 1ms 0.024% 87.06% 30ms 0.72% VecDuplicate_Seq 0 0% 87.06% 30ms 0.72% ompi_mpi_init 10ms 0.24% 87.30% 28ms 0.67% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 87.30% 28ms 0.67% VecDuplicate_MPI 0 0% 87.30% 27ms 0.65% VecCreate 1ms 0.024% 87.32% 26ms 0.62% VecAXPY_Seq 2ms 0.048% 87.37% 25ms 0.6% PetscMallocA 19ms 0.45% 87.83% 24ms 0.57% AbstractOneStepIvpOdeSolver::Solve 24ms 0.57% 88.40% 24ms 0.57% __ieee754_log_fma 24ms 0.57% 88.97% 24ms 0.57% daxpy_ 0 0% 88.97% 23ms 0.55% 1ms 0.024% 89.00% 23ms 0.55% PetscMallocAlign 0 0% 89.00% 23ms 0.55% VecNorm_MPI 0 0% 89.00% 23ms 0.55% VecNorm_MPI_Default.constprop.0 0 0% 89.00% 21ms 0.5% orte_init