File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3678ms, 88.20% of 4170ms total Dropped 429 nodes (cum <= 20.85ms) flat flat% sum% cum cum% 0 0% 0% 4163ms 99.83% __libc_start_call_main 0 0% 0% 4163ms 99.83% __libc_start_main_impl 0 0% 0% 4163ms 99.83% _start 0 0% 0% 4160ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4160ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4160ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4160ms 99.76% main 0 0% 0% 4123ms 98.87% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4123ms 98.87% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4123ms 98.87% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4115ms 98.68% AbstractCardiacProblem::Solve 1ms 0.024% 0.024% 4098ms 98.27% AbstractDynamicLinearPdeSolver::Solve 13ms 0.31% 0.34% 2423ms 58.11% AbstractCardiacTissue::SolveCellSystems 46ms 1.10% 1.44% 1436ms 34.44% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.44% 1358ms 32.57% LinearSystem::Solve 0 0% 1.44% 1307ms 31.34% KSPSolve 5ms 0.12% 1.56% 1307ms 31.34% KSPSolve_Private 1ms 0.024% 1.58% 1258ms 30.17% KSPSolve_SYMMLQ 32ms 0.77% 2.35% 1217ms 29.18% AbstractOneStepIvpOdeSolver::InternalSolve 71ms 1.70% 4.05% 1025ms 24.58% EulerIvpOdeSolver::CalculateNextYValue 271ms 6.50% 10.55% 937ms 22.47% CellLuoRudy1991FromCellML::EvaluateYDerivatives 367ms 8.80% 19.35% 830ms 19.90% __GI___exp 2ms 0.048% 19.40% 766ms 18.37% PCApply 0 0% 19.40% 758ms 18.18% PCApply_BJacobi_Singleblock 18ms 0.43% 19.83% 753ms 18.06% AbstractCardiacTissue::UpdateCaches (inline) 250ms 6.00% 25.83% 696ms 16.69% CellLuoRudy1991FromCellML::GetIIonic 0 0% 25.83% 625ms 14.99% KSPSolve_PREONLY (partial-inline) 0 0% 25.83% 586ms 14.05% KSP_PCApply.lto_priv.18 2ms 0.048% 25.88% 583ms 13.98% MatSolve 0 0% 25.88% 583ms 13.98% PCApply_ICC 576ms 13.81% 39.69% 578ms 13.86% MatSolve_SeqSBAIJ_1_NaturalOrdering 409ms 9.81% 49.50% 436ms 10.46% __ieee754_exp_fma 5ms 0.12% 49.62% 434ms 10.41% MatMult 17ms 0.41% 50.02% 417ms 10.00% MatMult_SeqAIJ 394ms 9.45% 59.47% 402ms 9.64% MatMult_SeqAIJ_Inode (inline) 38ms 0.91% 60.38% 277ms 6.64% BidomainSolver::SetupLinearSystem 2ms 0.048% 60.43% 249ms 5.97% KSPConvergedDefault 0 0% 60.43% 241ms 5.78% KSP_PCApply (partial-inline) 4ms 0.096% 60.53% 220ms 5.28% std::pow (inline) 14ms 0.34% 60.86% 216ms 5.18% __pow 24ms 0.58% 61.44% 202ms 4.84% __ieee754_pow_fma 81ms 1.94% 63.38% 183ms 4.39% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 63.38% 115ms 2.76% MatNullSpaceRemove 2ms 0.048% 63.43% 94ms 2.25% VecDuplicate 93ms 2.23% 65.66% 93ms 2.23% log_inline (inline) 22ms 0.53% 66.19% 91ms 2.18% MPI_Wtime 82ms 1.97% 68.15% 83ms 1.99% exp_inline (inline) 0 0% 68.15% 76ms 1.82% VecMDot 7ms 0.17% 68.32% 76ms 1.82% VecMXDot_Private 37ms 0.89% 69.21% 72ms 1.73% TimeStepper::TimeStepper 1ms 0.024% 69.23% 69ms 1.65% __GI___clock_gettime 68ms 1.63% 70.86% 68ms 1.63% [[vdso]] 5ms 0.12% 70.98% 60ms 1.44% PetscLogEventBeginDefault 30ms 0.72% 71.70% 57ms 1.37% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 5ms 0.12% 71.82% 57ms 1.37% VecCopy 11ms 0.26% 72.09% 56ms 1.34% AbstractCardiacCell::SetVoltage (partial-inline) 51ms 1.22% 73.31% 51ms 1.22% VecMDot_Seq 0 0% 73.31% 49ms 1.18% VecDuplicate_MPI 48ms 1.15% 74.46% 48ms 1.15% __memcpy_avx_unaligned_erms 10ms 0.24% 74.70% 46ms 1.10% PetscLogEventEndDefault 0 0% 74.70% 43ms 1.03% VecDuplicate_Seq 37ms 0.89% 75.59% 42ms 1.01% AbstractParameterisedSystem::SetAnyVariable 42ms 1.01% 76.59% 42ms 1.01% TimeStepper::CalculateNextTime 4ms 0.096% 76.69% 42ms 1.01% VecAXPY 3ms 0.072% 76.76% 42ms 1.01% VecCreate 21ms 0.5% 77.27% 42ms 1.01% std::__cxx11::basic_string::basic_string 6ms 0.14% 77.41% 41ms 0.98% PetscMallocA 41ms 0.98% 78.39% 41ms 0.98% std::isinf (inline) 40ms 0.96% 79.35% 40ms 0.96% [libchaste_heart.so] 40ms 0.96% 80.31% 40ms 0.96% ddot_ 4ms 0.096% 80.41% 39ms 0.94% VecMAXPY 39ms 0.94% 81.34% 39ms 0.94% __ieee754_log_fma 2ms 0.048% 81.39% 35ms 0.84% PetscMallocAlign 0 0% 81.39% 35ms 0.84% VecDot 10ms 0.24% 81.63% 34ms 0.82% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 81.63% 34ms 0.82% AbstractBidomainSolver::FinaliseLinearSystem 27ms 0.65% 82.28% 34ms 0.82% AbstractOneStepIvpOdeSolver::Solve 2ms 0.048% 82.33% 34ms 0.82% VecDestroy 0 0% 82.33% 33ms 0.79% CxxTest::RealWorldDescription::setUp 0 0% 82.33% 33ms 0.79% PMPI_Init_thread 0 0% 82.33% 33ms 0.79% PetscInitialize 0 0% 82.33% 33ms 0.79% PetscSetup::setUpWorld 0 0% 82.33% 33ms 0.79% PetscSetupUtils::CommonSetup 0 0% 82.33% 33ms 0.79% PetscSetupUtils::InitialisePetsc 1ms 0.024% 82.35% 33ms 0.79% VecNorm 0 0% 82.35% 33ms 0.79% ompi_mpi_init 0 0% 82.35% 31ms 0.74% VecCopy_Seq (partial-inline) 27ms 0.65% 83.00% 30ms 0.72% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 83.00% 30ms 0.72% PetscMemcpy (inline) 0 0% 83.00% 30ms 0.72% VecDot_Seq 0 0% 83.00% 30ms 0.72% VecXDot_Seq_Private.constprop.0 1ms 0.024% 83.02% 28ms 0.67% VecAXPY_Seq 2ms 0.048% 83.07% 28ms 0.67% VecCreate_MPI_Private 2ms 0.048% 83.12% 28ms 0.67% VecNorm_Seq 0 0% 83.12% 27ms 0.65% 27ms 0.65% 83.76% 27ms 0.65% [libm.so.6] 16ms 0.38% 84.15% 26ms 0.62% AbstractCardiacCell::GetVoltage (partial-inline) 8ms 0.19% 84.34% 26ms 0.62% __GI___libc_malloc 2ms 0.048% 84.39% 26ms 0.62% __posix_memalign 26ms 0.62% 85.01% 26ms 0.62% daxpy_ 21ms 0.5% 85.52% 25ms 0.6% AbstractParameterisedSystem::GetAnyVariable 13ms 0.31% 85.83% 25ms 0.6% TimeStepper::AdvanceOneTimeStep 24ms 0.58% 86.40% 25ms 0.6% VecMAXPY_Seq 7ms 0.17% 86.57% 24ms 0.58% top12 (inline) 23ms 0.55% 87.12% 23ms 0.55% asuint64 (inline) 22ms 0.53% 87.65% 22ms 0.53% RegularStimulus::GetStimulus 0 0% 87.65% 22ms 0.53% orte_init 2ms 0.048% 87.70% 22ms 0.53% std::vector::_M_assign_aux (inline) 0 0% 87.70% 22ms 0.53% std::vector::assign (inline) 21ms 0.5% 88.20% 21ms 0.5% std::vector::operator[] (inline)