File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110095ms, 91.81% of 119914ms total Dropped 1158 nodes (cum <= 599.57ms) flat flat% sum% cum cum% 0 0% 0% 119900ms 100% __libc_start_call_main 0 0% 0% 119900ms 100% __libc_start_main_impl 0 0% 0% 119900ms 100% _start 0 0% 0% 119897ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119897ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119897ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119897ms 100% main 0 0% 0% 119861ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119861ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119861ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119861ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119861ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119861ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 7ms 0.0058% 0.0058% 118586ms 98.89% AbstractCardiacProblem::Solve 11ms 0.0092% 0.015% 117786ms 98.23% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0042% 0.019% 66227ms 55.23% LinearSystem::Solve 2ms 0.0017% 0.021% 65706ms 54.79% KSPSolve 10ms 0.0083% 0.029% 65704ms 54.79% KSPSolve_Private 12ms 0.01% 0.039% 65242ms 54.41% KSPSolve_SYMMLQ 233ms 0.19% 0.23% 42814ms 35.70% AbstractCardiacTissue::SolveCellSystems 5ms 0.0042% 0.24% 37332ms 31.13% PCApply 5ms 0.0042% 0.24% 37321ms 31.12% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.24% 34549ms 28.81% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.24% 33444ms 27.89% PCApply_ICC 9ms 0.0075% 0.25% 33442ms 27.89% MatSolve 32923ms 27.46% 27.71% 33433ms 27.88% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1415ms 1.18% 28.89% 32957ms 27.48% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00083% 28.89% 32222ms 26.87% KSP_PCApply.lto_priv.18 6921ms 5.77% 34.66% 28543ms 23.80% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 13ms 0.011% 34.67% 21693ms 18.09% MatMult 264ms 0.22% 34.89% 21680ms 18.08% MatMult_SeqAIJ (partial-inline) 21164ms 17.65% 52.54% 21676ms 18.08% MatMult_SeqAIJ_Inode (inline) 2018ms 1.68% 54.22% 14803ms 12.34% CardiacNewtonSolver::Solve 319ms 0.27% 54.49% 8960ms 7.47% AbstractCardiacTissue::UpdateCaches (inline) 4322ms 3.60% 58.09% 8522ms 7.11% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1935ms 1.61% 59.71% 8464ms 7.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1097ms 0.91% 60.62% 7690ms 6.41% BidomainSolver::SetupLinearSystem 1064ms 0.89% 61.51% 7277ms 6.07% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.51% 7069ms 5.90% KSP_PCApply (partial-inline) 4ms 0.0033% 61.51% 6489ms 5.41% KSPConvergedDefault 5967ms 4.98% 66.49% 5967ms 4.98% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3876ms 3.23% 69.72% 3923ms 3.27% __ieee754_log_fma 0 0% 69.72% 3874ms 3.23% boost::numeric::ublas::norm_inf (inline) 2623ms 2.19% 71.91% 3874ms 3.23% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.91% 3874ms 3.23% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.91% 3874ms 3.23% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3425ms 2.86% 74.76% 3425ms 2.86% __memcpy_avx_unaligned_erms 8ms 0.0067% 74.77% 3394ms 2.83% MatNullSpaceRemove 0 0% 74.77% 3388ms 2.83% PetscMemcpy (inline) 27ms 0.023% 74.79% 3300ms 2.75% std::pow (inline) 370ms 0.31% 75.10% 3265ms 2.72% __pow 25ms 0.021% 75.12% 2917ms 2.43% VecCopy 3ms 0.0025% 75.13% 2889ms 2.41% VecCopy_Seq (partial-inline) 380ms 0.32% 75.44% 2883ms 2.40% __ieee754_pow_fma 1708ms 1.42% 76.87% 2821ms 2.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2682ms 2.24% 79.10% 2682ms 2.24% ddot_ 15ms 0.013% 79.12% 2627ms 2.19% VecAXPY 4ms 0.0033% 79.12% 2612ms 2.18% VecAXPY_Seq 2591ms 2.16% 81.28% 2591ms 2.16% daxpy_ 3ms 0.0025% 81.28% 2185ms 1.82% VecDot 1ms 0.00083% 81.28% 2182ms 1.82% VecDot_Seq 4ms 0.0033% 81.29% 2181ms 1.82% VecXDot_Seq_Private.constprop.0 1ms 0.00083% 81.29% 2056ms 1.71% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.29% 2002ms 1.67% VecMDot 9ms 0.0075% 81.29% 2002ms 1.67% VecMXDot_Private 1982ms 1.65% 82.95% 1989ms 1.66% VecMDot_Seq 30ms 0.025% 82.97% 1702ms 1.42% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1610ms 1.34% 84.32% 1685ms 1.41% exp_inline (inline) 1437ms 1.20% 85.51% 1437ms 1.20% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.51% 1409ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 8ms 0.0067% 85.52% 1384ms 1.15% VecMAXPY 1371ms 1.14% 86.66% 1376ms 1.15% VecMAXPY_Seq 1240ms 1.03% 87.70% 1240ms 1.03% __memset_avx2_unaligned_erms 0 0% 87.70% 1225ms 1.02% PetscMemzero (inline) 0 0% 87.70% 1168ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.70% 1168ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.70% 1168ms 0.97% boost_numeric_ublas_abs (inline) 1168ms 0.97% 88.67% 1168ms 0.97% std::abs (inline) 0 0% 88.67% 1121ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.67% 1121ms 0.93% CuboidMeshConstructor::Construct 3ms 0.0025% 88.67% 1121ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 7ms 0.0058% 88.68% 1111ms 0.93% boost::numeric::ublas::matrix_assign (inline) 239ms 0.2% 88.88% 1101ms 0.92% boost::numeric::ublas::indexing_matrix_assign 787ms 0.66% 89.54% 1043ms 0.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 89.54% 1035ms 0.86% VecDuplicate 3ms 0.0025% 89.54% 1000ms 0.83% Element::Element 3ms 0.0025% 89.54% 968ms 0.81% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0025% 89.55% 928ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 13ms 0.011% 89.56% 867ms 0.72% PetscMallocA 862ms 0.72% 90.27% 862ms 0.72% [libchaste_heart.so] 5ms 0.0042% 90.28% 858ms 0.72% BidomainAssembler::ComputeMatrixTerm 11ms 0.0092% 90.29% 854ms 0.71% PetscMallocAlign (partial-inline) 7ms 0.0058% 90.29% 843ms 0.7% VecScale 3ms 0.0025% 90.30% 836ms 0.7% VecScale_Seq 830ms 0.69% 90.99% 830ms 0.69% dscal_ 5ms 0.0042% 90.99% 829ms 0.69% boost::numeric::ublas::c_matrix::c_matrix (inline) 2ms 0.0017% 90.99% 775ms 0.65% VecNorm 771ms 0.64% 91.64% 771ms 0.64% log_inline (inline) 2ms 0.0017% 91.64% 760ms 0.63% VecNorm_Seq 3ms 0.0025% 91.64% 733ms 0.61% AbstractBidomainSolver::FinaliseLinearSystem 197ms 0.16% 91.81% 729ms 0.61% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.81% 719ms 0.6% BidomainProblem::WriteOneStep 7ms 0.0058% 91.81% 665ms 0.55% VecDuplicate_Seq 0 0% 91.81% 647ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)