File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3628ms, 86.57% of 4191ms total Dropped 443 nodes (cum <= 20.95ms) flat flat% sum% cum cum% 0 0% 0% 4184ms 99.83% __libc_start_call_main 0 0% 0% 4184ms 99.83% __libc_start_main_impl 0 0% 0% 4184ms 99.83% _start 0 0% 0% 4181ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4181ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4181ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4181ms 99.76% main 0 0% 0% 4144ms 98.88% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4144ms 98.88% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4144ms 98.88% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4137ms 98.71% AbstractCardiacProblem::Solve 2ms 0.048% 0.048% 4117ms 98.23% AbstractDynamicLinearPdeSolver::Solve 14ms 0.33% 0.38% 2264ms 54.02% AbstractCardiacTissue::SolveCellSystems 0 0% 0.38% 1557ms 37.15% LinearSystem::Solve 0 0% 0.38% 1506ms 35.93% KSPSolve 6ms 0.14% 0.52% 1506ms 35.93% KSPSolve_Private 1ms 0.024% 0.55% 1458ms 34.79% KSPSolve_SYMMLQ 46ms 1.10% 1.65% 1298ms 30.97% AbstractCardiacCell::ComputeExceptVoltage 23ms 0.55% 2.20% 1090ms 26.01% AbstractOneStepIvpOdeSolver::InternalSolve 45ms 1.07% 3.27% 899ms 21.45% EulerIvpOdeSolver::CalculateNextYValue 4ms 0.095% 3.36% 885ms 21.12% PCApply 1ms 0.024% 3.39% 869ms 20.73% PCApply_BJacobi_Singleblock 231ms 5.51% 8.90% 846ms 20.19% CellLuoRudy1991FromCellML::EvaluateYDerivatives 343ms 8.18% 17.08% 774ms 18.47% __GI___exp 29ms 0.69% 17.78% 731ms 17.44% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 17.78% 705ms 16.82% KSPSolve_PREONLY (partial-inline) 235ms 5.61% 23.38% 673ms 16.06% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 23.41% 661ms 15.77% PCApply_ICC 1ms 0.024% 23.43% 660ms 15.75% MatSolve 0 0% 23.43% 655ms 15.63% KSP_PCApply.lto_priv.18 644ms 15.37% 38.80% 652ms 15.56% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 2ms 0.048% 38.85% 424ms 10.12% MatMult 5ms 0.12% 38.96% 412ms 9.83% MatMult_SeqAIJ (partial-inline) 402ms 9.59% 48.56% 412ms 9.83% MatMult_SeqAIJ_Inode (inline) 376ms 8.97% 57.53% 409ms 9.76% __ieee754_exp_fma 3ms 0.072% 57.60% 322ms 7.68% KSPConvergedDefault 0 0% 57.60% 306ms 7.30% KSP_PCApply (partial-inline) 60ms 1.43% 59.03% 244ms 5.82% BidomainSolver::SetupLinearSystem 2ms 0.048% 59.08% 217ms 5.18% std::pow (inline) 16ms 0.38% 59.46% 215ms 5.13% __pow 26ms 0.62% 60.08% 199ms 4.75% __ieee754_pow_fma 72ms 1.72% 61.80% 182ms 4.34% CellLuoRudy1991FromCellML::VerifyStateVariables 2ms 0.048% 61.85% 127ms 3.03% MatNullSpaceRemove 0 0% 61.85% 118ms 2.82% VecDuplicate 96ms 2.29% 64.14% 96ms 2.29% log_inline (inline) 22ms 0.52% 64.66% 92ms 2.20% MPI_Wtime 0 0% 64.66% 83ms 1.98% VecMDot 5ms 0.12% 64.78% 83ms 1.98% VecMXDot_Private 35ms 0.84% 65.62% 76ms 1.81% TimeStepper::TimeStepper 76ms 1.81% 67.43% 76ms 1.81% exp_inline (inline) 74ms 1.77% 69.20% 74ms 1.77% ddot_ 70ms 1.67% 70.87% 70ms 1.67% [[vdso]] 0 0% 70.87% 70ms 1.67% __GI___clock_gettime 67ms 1.60% 72.46% 67ms 1.60% TimeStepper::CalculateNextTime 2ms 0.048% 72.51% 66ms 1.57% VecDuplicate_MPI 4ms 0.095% 72.61% 65ms 1.55% VecDestroy 7ms 0.17% 72.77% 64ms 1.53% PetscLogEventBeginDefault 7ms 0.17% 72.94% 61ms 1.46% PetscLogEventEndDefault 59ms 1.41% 74.35% 60ms 1.43% VecMDot_Seq 12ms 0.29% 74.64% 58ms 1.38% PetscMallocA 10ms 0.24% 74.87% 56ms 1.34% VecCopy 25ms 0.6% 75.47% 52ms 1.24% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 1ms 0.024% 75.50% 52ms 1.24% VecDuplicate_Seq 0 0% 75.50% 51ms 1.22% VecDot 5ms 0.12% 75.61% 46ms 1.10% PetscMallocAlign (partial-inline) 1ms 0.024% 75.64% 46ms 1.10% VecCreate 0 0% 75.64% 45ms 1.07% VecDot_Seq 0 0% 75.64% 45ms 1.07% VecNorm 1ms 0.024% 75.66% 45ms 1.07% VecXDot_Seq_Private.constprop.0 16ms 0.38% 76.04% 44ms 1.05% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 76.04% 44ms 1.05% AbstractBidomainSolver::FinaliseLinearSystem 20ms 0.48% 76.52% 44ms 1.05% std::__cxx11::basic_string::basic_string 3ms 0.072% 76.59% 43ms 1.03% VecCreate_MPI_Private 29ms 0.69% 77.28% 42ms 1.00% AbstractOneStepIvpOdeSolver::Solve 3ms 0.072% 77.36% 42ms 1.00% VecMAXPY 42ms 1.00% 78.36% 42ms 1.00% __ieee754_log_fma 42ms 1.00% 79.36% 42ms 1.00% std::isinf (inline) 9ms 0.21% 79.58% 41ms 0.98% TimeStepper::AdvanceOneTimeStep 0 0% 79.58% 41ms 0.98% VecNorm_Seq 7ms 0.17% 79.74% 40ms 0.95% AbstractCardiacCell::SetVoltage (partial-inline) 36ms 0.86% 80.60% 40ms 0.95% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 40ms 0.95% 81.56% 40ms 0.95% [libchaste_heart.so] 40ms 0.95% 82.51% 40ms 0.95% __memcpy_avx_unaligned_erms 14ms 0.33% 82.84% 34ms 0.81% top12 (inline) 0 0% 82.84% 33ms 0.79% CxxTest::RealWorldDescription::setUp 0 0% 82.84% 33ms 0.79% PMPI_Init_thread 0 0% 82.84% 33ms 0.79% PetscInitialize 0 0% 82.84% 33ms 0.79% PetscMemcpy (inline) 0 0% 82.84% 33ms 0.79% PetscSetup::setUpWorld 0 0% 82.84% 33ms 0.79% PetscSetupUtils::CommonSetup 0 0% 82.84% 33ms 0.79% PetscSetupUtils::InitialisePetsc 0 0% 82.84% 33ms 0.79% ompi_mpi_init 3ms 0.072% 82.92% 32ms 0.76% VecAXPY 19ms 0.45% 83.37% 29ms 0.69% AbstractParameterisedSystem::GetAnyVariable 26ms 0.62% 83.99% 28ms 0.67% AbstractParameterisedSystem::SetAnyVariable 3ms 0.072% 84.06% 27ms 0.64% PetscHeaderDestroy_Private 0 0% 84.06% 26ms 0.62% PetscMemzero (inline) 26ms 0.62% 84.68% 26ms 0.62% __memset_avx2_unaligned_erms 0 0% 84.68% 25ms 0.6% 25ms 0.6% 85.28% 25ms 0.6% DistributedVector::Stripe::operator[] (inline) 10ms 0.24% 85.52% 25ms 0.6% __GI___libc_malloc 0 0% 85.52% 24ms 0.57% __posix_memalign 1ms 0.024% 85.54% 23ms 0.55% VecSetType 0 0% 85.54% 23ms 0.55% orte_init 0 0% 85.54% 22ms 0.52% VecNorm_MPI 0 0% 85.54% 22ms 0.52% VecNorm_MPI_Default.constprop.0 22ms 0.52% 86.07% 22ms 0.52% [libm.so.6] 21ms 0.5% 86.57% 21ms 0.5% DistributedVector::Iterator::operator!=