File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3631ms, 85.46% of 4249ms total Dropped 476 nodes (cum <= 21.25ms) flat flat% sum% cum cum% 0 0% 0% 4240ms 99.79% __libc_start_call_main 0 0% 0% 4240ms 99.79% __libc_start_main_impl 0 0% 0% 4240ms 99.79% _start 0 0% 0% 4237ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4237ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4237ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4237ms 99.72% main 0 0% 0% 4200ms 98.85% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4200ms 98.85% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4200ms 98.85% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.024% 0.024% 4192ms 98.66% AbstractCardiacProblem::Solve 2ms 0.047% 0.071% 4179ms 98.35% AbstractDynamicLinearPdeSolver::Solve 20ms 0.47% 0.54% 2145ms 50.48% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 0.59% 1700ms 40.01% LinearSystem::Solve 0 0% 0.59% 1644ms 38.69% KSPSolve 7ms 0.16% 0.75% 1644ms 38.69% KSPSolve_Private 0 0% 0.75% 1586ms 37.33% KSPSolve_CG 61ms 1.44% 2.19% 1418ms 33.37% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 268ms 6.31% 8.50% 1249ms 29.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 4ms 0.094% 8.59% 941ms 22.15% PCApply 1ms 0.024% 8.61% 928ms 21.84% PCApply_BJacobi_Singleblock 0 0% 8.61% 771ms 18.15% KSPSolve_PREONLY (partial-inline) 0 0% 8.61% 735ms 17.30% KSP_PCApply.lto_priv.7 1ms 0.024% 8.64% 725ms 17.06% MatSolve 0 0% 8.64% 725ms 17.06% PCApply_ICC 713ms 16.78% 25.42% 719ms 16.92% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 12ms 0.28% 25.70% 651ms 15.32% AbstractCardiacTissue::UpdateCaches (inline) 72ms 1.69% 27.39% 605ms 14.24% CardiacNewtonSolver::Solve 149ms 3.51% 30.90% 600ms 14.12% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 6ms 0.14% 31.04% 505ms 11.89% MatMult 13ms 0.31% 31.35% 486ms 11.44% MatMult_SeqAIJ (partial-inline) 468ms 11.01% 42.36% 486ms 11.44% MatMult_SeqAIJ_Inode (inline) 199ms 4.68% 47.05% 377ms 8.87% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 87ms 2.05% 49.09% 347ms 8.17% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.024% 49.12% 299ms 7.04% KSPConvergedDefault 0 0% 49.12% 288ms 6.78% KSP_PCApply (partial-inline) 68ms 1.60% 50.72% 283ms 6.66% BidomainSolver::SetupLinearSystem 247ms 5.81% 56.53% 247ms 5.81% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 35ms 0.82% 57.35% 231ms 5.44% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.047% 57.40% 195ms 4.59% std::pow (inline) 19ms 0.45% 57.85% 193ms 4.54% __pow 186ms 4.38% 62.23% 190ms 4.47% __ieee754_log_fma 0 0% 62.23% 189ms 4.45% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 42ms 0.99% 63.21% 189ms 4.45% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 25ms 0.59% 63.80% 171ms 4.02% __ieee754_pow_fma 0 0% 63.80% 142ms 3.34% boost::numeric::ublas::norm_inf (inline) 93ms 2.19% 65.99% 142ms 3.34% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 65.99% 142ms 3.34% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 65.99% 142ms 3.34% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 2ms 0.047% 66.04% 135ms 3.18% MatNullSpaceRemove 128ms 3.01% 69.05% 128ms 3.01% ddot_ 43ms 1.01% 70.06% 113ms 2.66% __GI___exp 0 0% 70.06% 109ms 2.57% VecDuplicate 60ms 1.41% 71.48% 105ms 2.47% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 95ms 2.24% 73.71% 98ms 2.31% exp_inline (inline) 0 0% 73.71% 89ms 2.09% VecTDot 24ms 0.56% 74.28% 86ms 2.02% MPI_Wtime 0 0% 74.28% 80ms 1.88% VecMDot 3ms 0.071% 74.35% 80ms 1.88% VecMXDot_Private 0 0% 74.35% 78ms 1.84% VecTDot_Seq 0 0% 74.35% 78ms 1.84% VecXDot_Seq_Private.constprop.0 2ms 0.047% 74.39% 76ms 1.79% VecNorm 0 0% 74.39% 65ms 1.53% VecNorm_Seq 1ms 0.024% 74.42% 62ms 1.46% __GI___clock_gettime 61ms 1.44% 75.85% 61ms 1.44% [[vdso]] 11ms 0.26% 76.11% 60ms 1.41% PetscLogEventEndDefault 45ms 1.06% 77.17% 59ms 1.39% __ieee754_exp_fma 8ms 0.19% 77.36% 58ms 1.37% PetscLogEventBeginDefault 7ms 0.16% 77.52% 56ms 1.32% PetscMallocA 1ms 0.024% 77.55% 56ms 1.32% VecCreate 55ms 1.29% 78.84% 56ms 1.32% VecMDot_Seq 1ms 0.024% 78.87% 55ms 1.29% VecDuplicate_MPI 1ms 0.024% 78.89% 54ms 1.27% VecDuplicate_Seq 1ms 0.024% 78.91% 53ms 1.25% VecMAXPY 50ms 1.18% 80.09% 50ms 1.18% [libchaste_heart.so] 4ms 0.094% 80.18% 49ms 1.15% PetscMallocAlign 0 0% 80.18% 49ms 1.15% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 80.18% 49ms 1.15% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 80.18% 49ms 1.15% boost_numeric_ublas_abs (inline) 49ms 1.15% 81.34% 49ms 1.15% std::abs (inline) 2ms 0.047% 81.38% 47ms 1.11% VecDestroy 2ms 0.047% 81.43% 46ms 1.08% KSP_RemoveNullSpace (inline) 12ms 0.28% 81.71% 44ms 1.04% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 81.71% 44ms 1.04% AbstractBidomainSolver::FinaliseLinearSystem 44ms 1.04% 82.75% 44ms 1.04% log_inline (inline) 1ms 0.024% 82.77% 37ms 0.87% PetscTimeSubtract (inline) 0 0% 82.77% 33ms 0.78% CxxTest::RealWorldDescription::setUp 0 0% 82.77% 33ms 0.78% PetscInitialize 0 0% 82.77% 33ms 0.78% PetscSetup::setUpWorld 0 0% 82.77% 33ms 0.78% PetscSetupUtils::CommonSetup 0 0% 82.77% 33ms 0.78% PetscSetupUtils::InitialisePetsc 0 0% 82.77% 32ms 0.75% PMPI_Init_thread 0 0% 82.77% 32ms 0.75% ompi_mpi_init 31ms 0.73% 83.50% 31ms 0.73% DistributedVector::Iterator::operator!= 3ms 0.071% 83.57% 31ms 0.73% __posix_memalign 2ms 0.047% 83.62% 30ms 0.71% 0 0% 83.62% 30ms 0.71% VecNorm_MPI 0 0% 83.62% 30ms 0.71% VecNorm_MPI_Default.constprop.0 2ms 0.047% 83.67% 29ms 0.68% __GI___libc_malloc 3ms 0.071% 83.74% 28ms 0.66% VecCreate_MPI_Private 27ms 0.64% 84.37% 28ms 0.66% VecMAXPY_Seq 0 0% 84.37% 27ms 0.64% VecCopy 11ms 0.26% 84.63% 26ms 0.61% AbstractCardiacCell::SetVoltage 13ms 0.31% 84.94% 25ms 0.59% _int_malloc 0 0% 84.94% 23ms 0.54% VecAYPX 0 0% 84.94% 23ms 0.54% orte_init 22ms 0.52% 85.46% 22ms 0.52% DistributedVector::Stripe::operator[] (inline) 0 0% 85.46% 22ms 0.52% PetscMemcpy (inline)