File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3672ms, 86.71% of 4235ms total Dropped 488 nodes (cum <= 21.18ms) flat flat% sum% cum cum% 0 0% 0% 4226ms 99.79% __libc_start_call_main 0 0% 0% 4226ms 99.79% __libc_start_main_impl 0 0% 0% 4226ms 99.79% _start 0 0% 0% 4223ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4223ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4223ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4223ms 99.72% main 0 0% 0% 4182ms 98.75% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4182ms 98.75% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4182ms 98.75% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4173ms 98.54% AbstractCardiacProblem::Solve 3ms 0.071% 0.071% 4158ms 98.18% AbstractDynamicLinearPdeSolver::Solve 15ms 0.35% 0.43% 2236ms 52.80% AbstractCardiacTissue::SolveCellSystems 0 0% 0.43% 1520ms 35.89% LinearSystem::Solve 0 0% 0.43% 1471ms 34.73% KSPSolve 1ms 0.024% 0.45% 1471ms 34.73% KSPSolve_Private 4ms 0.094% 0.54% 1420ms 33.53% KSPSolve_SYMMLQ 17ms 0.4% 0.94% 1252ms 29.56% AbstractCardiacCell::ComputeExceptVoltage 26ms 0.61% 1.56% 1088ms 25.69% AbstractOneStepIvpOdeSolver::InternalSolve 49ms 1.16% 2.72% 928ms 21.91% EulerIvpOdeSolver::CalculateNextYValue 214ms 5.05% 7.77% 863ms 20.38% CellLuoRudy1991FromCellML::EvaluateYDerivatives 4ms 0.094% 7.86% 856ms 20.21% PCApply 0 0% 7.86% 843ms 19.91% PCApply_BJacobi_Singleblock 29ms 0.68% 8.55% 813ms 19.20% AbstractCardiacTissue::UpdateCaches (inline) 364ms 8.60% 17.14% 791ms 18.68% __GI___exp 268ms 6.33% 23.47% 747ms 17.64% CellLuoRudy1991FromCellML::GetIIonic 0 0% 23.47% 719ms 16.98% KSPSolve_PREONLY (partial-inline) 7ms 0.17% 23.64% 670ms 15.82% MatSolve 0 0% 23.64% 670ms 15.82% PCApply_ICC 655ms 15.47% 39.10% 660ms 15.58% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 39.10% 651ms 15.37% KSP_PCApply.lto_priv.18 5ms 0.12% 39.22% 466ms 11.00% MatMult 11ms 0.26% 39.48% 457ms 10.79% MatMult_SeqAIJ (partial-inline) 444ms 10.48% 49.96% 457ms 10.79% MatMult_SeqAIJ_Inode (inline) 341ms 8.05% 58.02% 406ms 9.59% __ieee754_exp_fma 66ms 1.56% 59.57% 352ms 8.31% BidomainSolver::SetupLinearSystem 1ms 0.024% 59.60% 299ms 7.06% KSPConvergedDefault 0 0% 59.60% 293ms 6.92% KSP_PCApply (partial-inline) 2ms 0.047% 59.65% 252ms 5.95% std::pow (inline) 15ms 0.35% 60.00% 250ms 5.90% __pow 14ms 0.33% 60.33% 235ms 5.55% __ieee754_pow_fma 1ms 0.024% 60.35% 134ms 3.16% MatNullSpaceRemove 119ms 2.81% 63.16% 119ms 2.81% log_inline (inline) 0 0% 63.16% 98ms 2.31% VecDuplicate 55ms 1.30% 64.46% 97ms 2.29% CellLuoRudy1991FromCellML::VerifyStateVariables 31ms 0.73% 65.19% 95ms 2.24% MPI_Wtime 90ms 2.13% 67.32% 94ms 2.22% exp_inline (inline) 0 0% 67.32% 87ms 2.05% VecMDot 6ms 0.14% 67.46% 87ms 2.05% VecMXDot_Private 76ms 1.79% 69.26% 76ms 1.79% ddot_ 65ms 1.53% 70.79% 65ms 1.53% [[vdso]] 0 0% 70.79% 64ms 1.51% __GI___clock_gettime 1ms 0.024% 70.81% 63ms 1.49% VecDot 10ms 0.24% 71.05% 62ms 1.46% PetscLogEventEndDefault 5ms 0.12% 71.17% 60ms 1.42% PetscLogEventBeginDefault 19ms 0.45% 71.62% 59ms 1.39% TimeStepper::TimeStepper 0 0% 71.62% 58ms 1.37% VecDot_Seq 58ms 1.37% 72.99% 58ms 1.37% VecMDot_Seq 1ms 0.024% 73.01% 58ms 1.37% VecXDot_Seq_Private.constprop.0 10ms 0.24% 73.25% 57ms 1.35% AbstractCardiacCell::SetVoltage (partial-inline) 4ms 0.094% 73.34% 57ms 1.35% VecDuplicate_MPI 41ms 0.97% 74.31% 57ms 1.35% top12 (inline) 56ms 1.32% 75.63% 56ms 1.32% [libchaste_heart.so] 9ms 0.21% 75.84% 53ms 1.25% VecCopy 1ms 0.024% 75.87% 46ms 1.09% VecMAXPY 1ms 0.024% 75.89% 46ms 1.09% VecNorm 1ms 0.024% 75.91% 45ms 1.06% VecDestroy 2ms 0.047% 75.96% 44ms 1.04% VecAXPY 11ms 0.26% 76.22% 41ms 0.97% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 76.22% 41ms 0.97% AbstractBidomainSolver::FinaliseLinearSystem 3ms 0.071% 76.29% 41ms 0.97% VecCreate 1ms 0.024% 76.32% 41ms 0.97% VecDuplicate_Seq 32ms 0.76% 77.07% 40ms 0.94% AbstractParameterisedSystem::SetAnyVariable 39ms 0.92% 77.99% 40ms 0.94% __ieee754_log_fma 0 0% 77.99% 37ms 0.87% CxxTest::RealWorldDescription::setUp 0 0% 77.99% 37ms 0.87% PMPI_Init_thread 0 0% 77.99% 37ms 0.87% PetscInitialize 0 0% 77.99% 37ms 0.87% PetscSetup::setUpWorld 0 0% 77.99% 37ms 0.87% PetscSetupUtils::CommonSetup 0 0% 77.99% 37ms 0.87% PetscSetupUtils::InitialisePetsc 37ms 0.87% 78.87% 37ms 0.87% TimeStepper::CalculateNextTime 1ms 0.024% 78.89% 37ms 0.87% VecNorm_Seq 37ms 0.87% 79.76% 37ms 0.87% __memcpy_avx_unaligned_erms 37ms 0.87% 80.64% 37ms 0.87% asuint64 (inline) 0 0% 80.64% 37ms 0.87% ompi_mpi_init 8ms 0.19% 80.83% 36ms 0.85% PetscMallocA 0 0% 80.83% 34ms 0.8% VecNorm_MPI 2ms 0.047% 80.87% 34ms 0.8% VecNorm_MPI_Default.constprop.0 28ms 0.66% 81.53% 33ms 0.78% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 20ms 0.47% 82.01% 32ms 0.76% AbstractOneStepIvpOdeSolver::Solve 24ms 0.57% 82.57% 32ms 0.76% AbstractParameterisedSystem::GetAnyVariable 0 0% 82.57% 32ms 0.76% PetscMemcpy (inline) 31ms 0.73% 83.31% 31ms 0.73% DistributedVector::Stripe::operator[] (inline) 2ms 0.047% 83.35% 30ms 0.71% 29ms 0.68% 84.04% 29ms 0.68% DistributedVector::Iterator::operator!= 3ms 0.071% 84.11% 29ms 0.68% VecCreate_MPI_Private 12ms 0.28% 84.39% 28ms 0.66% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 2ms 0.047% 84.44% 28ms 0.66% PetscMallocAlign 1ms 0.024% 84.46% 28ms 0.66% VecAXPY_Seq 27ms 0.64% 85.10% 27ms 0.64% daxpy_ 26ms 0.61% 85.71% 26ms 0.61% TimeStepper::GetNextTimeStep 24ms 0.57% 86.28% 26ms 0.61% VecMAXPY_Seq 5ms 0.12% 86.40% 24ms 0.57% AbstractCardiacCell::GetVoltage (inline) 0 0% 86.40% 24ms 0.57% VecCopy_Seq (partial-inline) 13ms 0.31% 86.71% 23ms 0.54% TimeStepper::AdvanceOneTimeStep 0 0% 86.71% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 86.71% 22ms 0.52% orte_init