File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3573ms, 87.15% of 4100ms total Dropped 479 nodes (cum <= 20.50ms) flat flat% sum% cum cum% 0 0% 0% 4091ms 99.78% __libc_start_call_main 0 0% 0% 4091ms 99.78% __libc_start_main_impl 0 0% 0% 4091ms 99.78% _start 0 0% 0% 4088ms 99.71% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4088ms 99.71% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4088ms 99.71% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4088ms 99.71% main 0 0% 0% 4050ms 98.78% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4050ms 98.78% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4050ms 98.78% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.024% 0.024% 4043ms 98.61% AbstractCardiacProblem::Solve 3ms 0.073% 0.098% 4027ms 98.22% AbstractDynamicLinearPdeSolver::Solve 1ms 0.024% 0.12% 2122ms 51.76% LinearSystem::Solve 0 0% 0.12% 2086ms 50.88% KSPSolve 7ms 0.17% 0.29% 2086ms 50.88% KSPSolve_Private 2ms 0.049% 0.34% 2037ms 49.68% KSPSolve_CG 12ms 0.29% 0.63% 1606ms 39.17% AbstractCardiacTissue::SolveCellSystems 2ms 0.049% 0.68% 1348ms 32.88% PCApply 1ms 0.024% 0.71% 1330ms 32.44% PCApply_BJacobi_Singleblock 0 0% 0.71% 1130ms 27.56% KSPSolve_PREONLY (partial-inline) 56ms 1.37% 2.07% 1083ms 26.41% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 2.07% 1077ms 26.27% KSP_PCApply.lto_priv.7 8ms 0.2% 2.27% 1068ms 26.05% MatSolve 0 0% 2.27% 1068ms 26.05% PCApply_ICC 1043ms 25.44% 27.71% 1050ms 25.61% MatSolve_SeqSBAIJ_1_NaturalOrdering 225ms 5.49% 33.20% 962ms 23.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.17% 33.37% 523ms 12.76% MatMult 4ms 0.098% 33.46% 508ms 12.39% MatMult_SeqAIJ 496ms 12.10% 45.56% 508ms 12.39% MatMult_SeqAIJ_Inode (inline) 16ms 0.39% 45.95% 471ms 11.49% AbstractCardiacTissue::UpdateCaches (inline) 121ms 2.95% 48.90% 441ms 10.76% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 56ms 1.37% 50.27% 411ms 10.02% CardiacNewtonSolver::Solve 3ms 0.073% 50.34% 372ms 9.07% KSPConvergedDefault 0 0% 50.34% 369ms 9.00% KSP_PCApply (partial-inline) 38ms 0.93% 51.27% 257ms 6.27% BidomainSolver::SetupLinearSystem 120ms 2.93% 54.20% 236ms 5.76% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 25ms 0.61% 54.80% 222ms 5.41% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 30ms 0.73% 55.54% 203ms 4.95% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 55.54% 197ms 4.80% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 41ms 1.00% 56.54% 197ms 4.80% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 162ms 3.95% 60.49% 162ms 3.95% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 0 0% 60.49% 149ms 3.63% MatNullSpaceRemove 14ms 0.34% 60.83% 144ms 3.51% __pow 0 0% 60.83% 144ms 3.51% std::pow (inline) 141ms 3.44% 64.27% 141ms 3.44% ddot_ 26ms 0.63% 64.90% 130ms 3.17% __ieee754_pow_fma 127ms 3.10% 68.00% 129ms 3.15% __ieee754_log_fma 73ms 1.78% 69.78% 126ms 3.07% __GI___exp 2ms 0.049% 69.83% 112ms 2.73% VecDuplicate 0 0% 69.83% 105ms 2.56% boost::numeric::ublas::norm_inf (inline) 77ms 1.88% 71.71% 105ms 2.56% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.71% 105ms 2.56% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.71% 105ms 2.56% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 0 0% 71.71% 99ms 2.41% VecTDot 1ms 0.024% 71.73% 87ms 2.12% VecMDot 9ms 0.22% 71.95% 86ms 2.10% VecMXDot_Private 0 0% 71.95% 86ms 2.10% VecTDot_Seq 0 0% 71.95% 86ms 2.10% VecXDot_Seq_Private.constprop.0 19ms 0.46% 72.41% 84ms 2.05% MPI_Wtime 20ms 0.49% 72.90% 76ms 1.85% PetscLogEventBeginDefault 2ms 0.049% 72.95% 76ms 1.85% VecNorm 68ms 1.66% 74.61% 70ms 1.71% exp_inline (inline) 1ms 0.024% 74.63% 69ms 1.68% VecDuplicate_Seq 2ms 0.049% 74.68% 65ms 1.59% VecDestroy 1ms 0.024% 74.71% 65ms 1.59% __GI___clock_gettime 64ms 1.56% 76.27% 64ms 1.56% [[vdso]] 3ms 0.073% 76.34% 62ms 1.51% VecMAXPY 1ms 0.024% 76.37% 61ms 1.49% VecNorm_Seq 37ms 0.9% 77.27% 60ms 1.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 6ms 0.15% 77.41% 59ms 1.44% PetscLogEventEndDefault 53ms 1.29% 78.71% 56ms 1.37% VecMDot_Seq 54ms 1.32% 80.02% 54ms 1.32% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 47ms 1.15% 81.17% 52ms 1.27% __ieee754_exp_fma 4ms 0.098% 81.27% 41ms 1.00% VecDuplicate_MPI 5ms 0.12% 81.39% 40ms 0.98% PetscMallocA 0 0% 81.39% 39ms 0.95% PetscTimeSubtract (inline) 2ms 0.049% 81.44% 39ms 0.95% VecSetType 37ms 0.9% 82.34% 38ms 0.93% VecMAXPY_Seq 2ms 0.049% 82.39% 36ms 0.88% VecCreate 0 0% 82.39% 35ms 0.85% PetscMallocAlign (partial-inline) 1ms 0.024% 82.41% 34ms 0.83% AbstractBidomainSolver::FinaliseLinearSystem 34ms 0.83% 83.24% 34ms 0.83% [libchaste_heart.so] 34ms 0.83% 84.07% 34ms 0.83% log_inline (inline) 0 0% 84.07% 33ms 0.8% CxxTest::RealWorldDescription::setUp 0 0% 84.07% 33ms 0.8% PMPI_Init_thread 0 0% 84.07% 33ms 0.8% PetscInitialize 0 0% 84.07% 33ms 0.8% PetscSetup::setUpWorld 0 0% 84.07% 33ms 0.8% PetscSetupUtils::CommonSetup 0 0% 84.07% 33ms 0.8% PetscSetupUtils::InitialisePetsc 0 0% 84.07% 33ms 0.8% ompi_mpi_init 10ms 0.24% 84.32% 31ms 0.76% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.024% 84.34% 29ms 0.71% 6ms 0.15% 84.49% 29ms 0.71% VecCopy 6ms 0.15% 84.63% 28ms 0.68% PetscHeaderDestroy_Private 0 0% 84.63% 28ms 0.68% VecCreate_Seq 6ms 0.15% 84.78% 27ms 0.66% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#3}::operator() (inline) 26ms 0.63% 85.41% 26ms 0.63% DistributedVector::Stripe::operator[] (inline) 0 0% 85.41% 26ms 0.63% VecCreate_MPI_Private 0 0% 85.41% 26ms 0.63% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 85.41% 26ms 0.63% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 85.41% 26ms 0.63% boost_numeric_ublas_abs (inline) 26ms 0.63% 86.05% 26ms 0.63% std::abs (inline) 2ms 0.049% 86.10% 25ms 0.61% VecAXPY 12ms 0.29% 86.39% 24ms 0.59% AbstractCardiacCell::SetVoltage 5ms 0.12% 86.51% 24ms 0.59% __GI___libc_free 0 0% 86.51% 23ms 0.56% PetscMemzero (inline) 23ms 0.56% 87.07% 23ms 0.56% __memset_avx2_unaligned_erms 3ms 0.073% 87.15% 22ms 0.54% VecSet 0 0% 87.15% 22ms 0.54% orte_init