File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3684ms, 86.58% of 4255ms total Dropped 472 nodes (cum <= 21.27ms) flat flat% sum% cum cum% 0 0% 0% 4247ms 99.81% __libc_start_call_main 0 0% 0% 4247ms 99.81% __libc_start_main_impl 0 0% 0% 4247ms 99.81% _start 0 0% 0% 4244ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4244ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4244ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4244ms 99.74% main 0 0% 0% 4208ms 98.90% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4208ms 98.90% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4208ms 98.90% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4200ms 98.71% AbstractCardiacProblem::Solve 0 0% 0% 4185ms 98.35% AbstractDynamicLinearPdeSolver::Solve 13ms 0.31% 0.31% 2196ms 51.61% AbstractCardiacTissue::SolveCellSystems 0 0% 0.31% 1658ms 38.97% LinearSystem::Solve 0 0% 0.31% 1600ms 37.60% KSPSolve 6ms 0.14% 0.45% 1600ms 37.60% KSPSolve_Private 3ms 0.071% 0.52% 1555ms 36.55% KSPSolve_SYMMLQ 33ms 0.78% 1.29% 1296ms 30.46% AbstractCardiacCell::ComputeExceptVoltage 24ms 0.56% 1.86% 1126ms 26.46% AbstractOneStepIvpOdeSolver::InternalSolve 5ms 0.12% 1.97% 1004ms 23.60% PCApply 0 0% 1.97% 986ms 23.17% PCApply_BJacobi_Singleblock 61ms 1.43% 3.41% 928ms 21.81% EulerIvpOdeSolver::CalculateNextYValue 237ms 5.57% 8.98% 858ms 20.16% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 8.98% 811ms 19.06% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 9.00% 768ms 18.05% PCApply_ICC 1ms 0.024% 9.02% 767ms 18.03% MatSolve 752ms 17.67% 26.70% 759ms 17.84% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 350ms 8.23% 34.92% 759ms 17.84% __GI___exp 1ms 0.024% 34.95% 725ms 17.04% KSP_PCApply.lto_priv.18 24ms 0.56% 35.51% 708ms 16.64% AbstractCardiacTissue::UpdateCaches (inline) 248ms 5.83% 41.34% 664ms 15.61% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.071% 41.41% 449ms 10.55% MatMult 1ms 0.024% 41.43% 438ms 10.29% MatMult_SeqAIJ 432ms 10.15% 51.59% 438ms 10.29% MatMult_SeqAIJ_Inode (inline) 368ms 8.65% 60.24% 391ms 9.19% __ieee754_exp_fma 1ms 0.024% 60.26% 372ms 8.74% KSPConvergedDefault 0 0% 60.26% 345ms 8.11% KSP_PCApply (partial-inline) 44ms 1.03% 61.29% 283ms 6.65% BidomainSolver::SetupLinearSystem 4ms 0.094% 61.39% 220ms 5.17% std::pow (inline) 18ms 0.42% 61.81% 216ms 5.08% __pow 36ms 0.85% 62.66% 198ms 4.65% __ieee754_pow_fma 61ms 1.43% 64.09% 135ms 3.17% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 64.11% 123ms 2.89% VecDuplicate 2ms 0.047% 64.16% 107ms 2.51% MatNullSpaceRemove 76ms 1.79% 65.95% 105ms 2.47% TimeStepper::TimeStepper 96ms 2.26% 68.20% 96ms 2.26% log_inline (inline) 23ms 0.54% 68.74% 84ms 1.97% MPI_Wtime 5ms 0.12% 68.86% 71ms 1.67% VecCopy 14ms 0.33% 69.19% 69ms 1.62% PetscLogEventBeginDefault 1ms 0.024% 69.21% 69ms 1.62% VecMDot 5ms 0.12% 69.33% 68ms 1.60% VecMXDot_Private 68ms 1.60% 70.93% 68ms 1.60% __memcpy_avx_unaligned_erms 65ms 1.53% 72.46% 66ms 1.55% exp_inline (inline) 1ms 0.024% 72.48% 64ms 1.50% VecDuplicate_MPI 1ms 0.024% 72.50% 61ms 1.43% __GI___clock_gettime 60ms 1.41% 73.91% 60ms 1.41% [[vdso]] 10ms 0.24% 74.15% 58ms 1.36% PetscLogEventEndDefault 0 0% 74.15% 58ms 1.36% VecDuplicate_Seq 58ms 1.36% 75.51% 58ms 1.36% ddot_ 0 0% 75.51% 57ms 1.34% VecDestroy 6ms 0.14% 75.65% 55ms 1.29% VecCreate 3ms 0.071% 75.72% 54ms 1.27% PetscMallocA 1ms 0.024% 75.75% 51ms 1.20% PetscMallocAlign (partial-inline) 0 0% 75.75% 46ms 1.08% PetscMemcpy (inline) 0 0% 75.75% 46ms 1.08% VecDot 46ms 1.08% 76.83% 46ms 1.08% [libchaste_heart.so] 44ms 1.03% 77.86% 45ms 1.06% VecMDot_Seq 0 0% 77.86% 45ms 1.06% VecNorm 19ms 0.45% 78.31% 44ms 1.03% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 4ms 0.094% 78.40% 44ms 1.03% VecAXPY 1ms 0.024% 78.43% 41ms 0.96% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 78.43% 41ms 0.96% VecDot_Seq 0 0% 78.43% 41ms 0.96% VecXDot_Seq_Private.constprop.0 8ms 0.19% 78.61% 40ms 0.94% AbstractBidomainSolver::CheckCompatibilityCondition 13ms 0.31% 78.92% 39ms 0.92% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 78.94% 37ms 0.87% VecCopy_Seq (partial-inline) 0 0% 78.94% 37ms 0.87% VecNorm_Seq 5ms 0.12% 79.06% 36ms 0.85% VecMAXPY 34ms 0.8% 79.86% 36ms 0.85% __ieee754_log_fma 34ms 0.8% 80.66% 34ms 0.8% TimeStepper::CalculateNextTime 3ms 0.071% 80.73% 34ms 0.8% VecCreate_MPI_Private 30ms 0.71% 81.43% 33ms 0.78% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 81.43% 32ms 0.75% CxxTest::RealWorldDescription::setUp 0 0% 81.43% 32ms 0.75% PetscInitialize 0 0% 81.43% 32ms 0.75% PetscSetup::setUpWorld 0 0% 81.43% 32ms 0.75% PetscSetupUtils::CommonSetup 0 0% 81.43% 32ms 0.75% PetscSetupUtils::InitialisePetsc 0 0% 81.43% 32ms 0.75% VecNorm_MPI 1ms 0.024% 81.46% 32ms 0.75% VecNorm_MPI_Default.constprop.0 32ms 0.75% 82.21% 32ms 0.75% std::isinf (inline) 0 0% 82.21% 31ms 0.73% PMPI_Init_thread 0 0% 82.21% 31ms 0.73% ompi_mpi_init 21ms 0.49% 82.70% 30ms 0.71% AbstractCardiacCell::GetVoltage (partial-inline) 3ms 0.071% 82.77% 30ms 0.71% PetscHeaderDestroy_Private 23ms 0.54% 83.31% 29ms 0.68% AbstractOneStepIvpOdeSolver::Solve 0 0% 83.31% 29ms 0.68% PetscMemzero (inline) 2ms 0.047% 83.36% 28ms 0.66% 1ms 0.024% 83.38% 28ms 0.66% VecSetType 28ms 0.66% 84.04% 28ms 0.66% __memset_avx2_unaligned_erms 3ms 0.071% 84.11% 28ms 0.66% __posix_memalign 5ms 0.12% 84.23% 27ms 0.63% std::__cxx11::basic_string::basic_string 26ms 0.61% 84.84% 26ms 0.61% DistributedVector::Iterator::operator!= 0 0% 84.84% 26ms 0.61% VecAXPY_Seq 1ms 0.024% 84.86% 26ms 0.61% std::vector::_M_assign_aux (inline) 0 0% 84.86% 26ms 0.61% std::vector::assign (inline) 9ms 0.21% 85.08% 25ms 0.59% __GI___libc_malloc 0 0% 85.08% 25ms 0.59% std::__copy_move::__copy_m (inline) 0 0% 85.08% 25ms 0.59% std::__copy_move_a (inline) 0 0% 85.08% 25ms 0.59% std::__copy_move_a1 (inline) 0 0% 85.08% 25ms 0.59% std::__copy_move_a2 (inline) 0 0% 85.08% 25ms 0.59% std::copy (inline) 24ms 0.56% 85.64% 24ms 0.56% daxpy_ 19ms 0.45% 86.09% 23ms 0.54% AbstractParameterisedSystem::SetAnyVariable 4ms 0.094% 86.18% 22ms 0.52% PetscHeaderCreate_Private 11ms 0.26% 86.44% 22ms 0.52% TimeStepper::AdvanceOneTimeStep 0 0% 86.44% 22ms 0.52% orte_init 6ms 0.14% 86.58% 22ms 0.52% top12 (inline)