File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 339ms, 90.88% of 373ms total Dropped 132 nodes (cum <= 1.86ms) flat flat% sum% cum cum% 0 0% 0% 365ms 97.86% __libc_start_call_main 0 0% 0% 365ms 97.86% __libc_start_main_impl 0 0% 0% 365ms 97.86% _start 0 0% 0% 362ms 97.05% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 362ms 97.05% CxxTest::TestRunner::runAllTests 0 0% 0% 362ms 97.05% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 362ms 97.05% main 0 0% 0% 330ms 88.47% CxxTest::RealTestDescription::run 0 0% 0% 330ms 88.47% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 330ms 88.47% CxxTest::TestRunner::runTest (inline) 0 0% 0% 330ms 88.47% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 330ms 88.47% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 327ms 87.67% AbstractCardiacProblem::Solve 0 0% 0% 326ms 87.40% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 288ms 77.21% LinearSystem::Solve 0 0% 0% 287ms 76.94% KSPSolve 0 0% 0% 287ms 76.94% KSPSolve_CG 0 0% 0% 287ms 76.94% KSPSolve_Private 0 0% 0% 172ms 46.11% KSP_PCApply.lto_priv.7 1ms 0.27% 0.27% 168ms 45.04% PCApply 0 0% 0.27% 167ms 44.77% PCApply_BJacobi_Singleblock 0 0% 0.27% 149ms 39.95% KSPSolve_PREONLY (partial-inline) 0 0% 0.27% 138ms 37.00% MatSolve 137ms 36.73% 37.00% 138ms 37.00% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 37.00% 138ms 37.00% PCApply_ICC 0 0% 37.00% 62ms 16.62% MatMult 0 0% 37.00% 62ms 16.62% MatMult_SeqAIJ 62ms 16.62% 53.62% 62ms 16.62% MatMult_SeqAIJ_Inode (inline) 36ms 9.65% 63.27% 36ms 9.65% ddot_ 0 0% 63.27% 34ms 9.12% AbstractCardiacTissue::SolveCellSystems 0 0% 63.27% 29ms 7.77% CxxTest::RealWorldDescription::setUp 0 0% 63.27% 29ms 7.77% PetscSetup::setUpWorld 0 0% 63.27% 29ms 7.77% PetscSetupUtils::CommonSetup 0 0% 63.27% 28ms 7.51% PMPI_Init_thread 0 0% 63.27% 28ms 7.51% PetscInitialize 0 0% 63.27% 28ms 7.51% PetscSetupUtils::InitialisePetsc 0 0% 63.27% 28ms 7.51% VecTDot 0 0% 63.27% 28ms 7.51% VecTDot_Seq 0 0% 63.27% 28ms 7.51% VecXDot_Seq_Private.constprop.0 0 0% 63.27% 28ms 7.51% ompi_mpi_init 1ms 0.27% 63.54% 24ms 6.43% 0 0% 63.54% 21ms 5.63% AbstractCardiacCell::ComputeExceptVoltage 0 0% 63.54% 20ms 5.36% MatNullSpaceRemove 0 0% 63.54% 18ms 4.83% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 63.54% 18ms 4.83% orte_init 4ms 1.07% 64.61% 16ms 4.29% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 64.61% 16ms 4.29% EulerIvpOdeSolver::CalculateNextYValue 0 0% 64.61% 15ms 4.02% VecMDot 14ms 3.75% 68.36% 15ms 4.02% VecMDot_Seq 0 0% 68.36% 15ms 4.02% VecMXDot_Private 0 0% 68.36% 13ms 3.49% mca_base_framework_open 0 0% 68.36% 12ms 3.22% KSP_PCApply (partial-inline) 3ms 0.8% 69.17% 12ms 3.22% __GI___exp 0 0% 69.17% 12ms 3.22% __GI__dl_catch_exception 0 0% 69.17% 12ms 3.22% _dl_catch_error 0 0% 69.17% 12ms 3.22% _dlerror_run 0 0% 69.17% 12ms 3.22% mca_base_framework_components_register 0 0% 69.17% 12ms 3.22% mca_base_framework_register 0 0% 69.17% 12ms 3.22% opal_stackframe_output 0 0% 69.17% 11ms 2.95% hwloc_topology_load 0 0% 69.17% 10ms 2.68% ___dlopen 0 0% 69.17% 10ms 2.68% _dl_open 0 0% 69.17% 10ms 2.68% dl_open_worker 0 0% 69.17% 10ms 2.68% dlopen_doit 0 0% 69.17% 10ms 2.68% dlopen_implementation (inline) 0 0% 69.17% 10ms 2.68% hwloc_linux_get_tid_last_cpu_location 0 0% 69.17% 10ms 2.68% mca_base_component_find 0 0% 69.17% 10ms 2.68% mca_base_component_repository_open 0 0% 69.17% 9ms 2.41% VecNorm 0 0% 69.17% 9ms 2.41% VecNorm_Seq 0 0% 69.17% 9ms 2.41% _dl_init 0 0% 69.17% 9ms 2.41% call_init (inline) 0 0% 69.17% 8ms 2.14% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 69.17% 8ms 2.14% VecAYPX 8ms 2.14% 71.31% 8ms 2.14% VecAYPX_Seq 0 0% 71.31% 8ms 2.14% VecDuplicate 8ms 2.14% 73.46% 8ms 2.14% __ieee754_exp_fma 0 0% 73.46% 8ms 2.14% dl_open_worker_begin 3ms 0.8% 74.26% 7ms 1.88% CellLuoRudy1991FromCellML::GetIIonic 2ms 0.54% 74.80% 7ms 1.88% VecAXPY 0 0% 74.80% 7ms 1.88% VecDuplicate_Seq 0 0% 74.80% 7ms 1.88% _dl_start_user 0 0% 74.80% 6ms 1.61% VecSetType 0 0% 74.80% 5ms 1.34% VecAXPY_Seq 0 0% 74.80% 5ms 1.34% VecCreate_Seq 0 0% 74.80% 5ms 1.34% VecMAXPY 5ms 1.34% 76.14% 5ms 1.34% VecMAXPY_Seq 5ms 1.34% 77.48% 5ms 1.34% __memcpy_evex_unaligned_erms 0 0% 77.48% 5ms 1.34% _dl_map_object 0 0% 77.48% 5ms 1.34% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 77.48% 5ms 1.34% boost::serialization::singleton::get_instance 5ms 1.34% 78.82% 5ms 1.34% daxpy_ 1ms 0.27% 79.09% 4ms 1.07% BidomainSolver::SetupLinearSystem 0 0% 79.09% 4ms 1.07% PetscMemcpy (inline) 2ms 0.54% 79.62% 4ms 1.07% __GI___libc_malloc 4ms 1.07% 80.70% 4ms 1.07% __strcmp_evex 3ms 0.8% 81.50% 4ms 1.07% _dl_fixup 0 0% 81.50% 4ms 1.07% _dl_runtime_resolve_xsavec 0 0% 81.50% 4ms 1.07% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 81.50% 4ms 1.07% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 81.50% 4ms 1.07% mca_base_framework_components_open 0 0% 81.50% 4ms 1.07% mca_topo_base_dist_graph_neighbors_count 0 0% 81.50% 4ms 1.07% opal_hwloc_base_get_topology 0 0% 81.50% 4ms 1.07% orte_ess_base_proc_binding 0 0% 81.50% 3ms 0.8% AbstractCardiacProblem::Initialise 2ms 0.54% 82.04% 3ms 0.8% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 82.04% 3ms 0.8% CxxTest::RealWorldDescription::tearDown 0 0% 82.04% 3ms 0.8% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 82.04% 3ms 0.8% PetscFinalize 0 0% 82.04% 3ms 0.8% PetscSetup::tearDownWorld 0 0% 82.04% 3ms 0.8% PetscSetupUtils::CommonFinalize 0 0% 82.04% 3ms 0.8% VecCopy 0 0% 82.04% 3ms 0.8% VecCopy_Seq (partial-inline) 2ms 0.54% 82.57% 3ms 0.8% VecCreate_Seq_Private 3ms 0.8% 83.38% 3ms 0.8% [libchaste_heart.so] 3ms 0.8% 84.18% 3ms 0.8% __GI___libc_read 0 0% 84.18% 3ms 0.8% __GI_exit 0 0% 84.18% 3ms 0.8% __cxa_finalize 2ms 0.54% 84.72% 3ms 0.8% __libc_openat64 0 0% 84.72% 3ms 0.8% __run_exit_handlers 0 0% 84.72% 3ms 0.8% _dl_call_fini 0 0% 84.72% 3ms 0.8% _dl_fini 0 0% 84.72% 3ms 0.8% _dl_lookup_symbol_x 1ms 0.27% 84.99% 3ms 0.8% _dl_map_object_deps 0 0% 84.99% 3ms 0.8% _dl_map_object_from_fd 0 0% 84.99% 3ms 0.8% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 1ms 0.27% 85.25% 3ms 0.8% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 3ms 0.8% 86.06% 3ms 0.8% do_lookup_x 0 0% 86.06% 3ms 0.8% ompi_mpi_finalize 0 0% 86.06% 3ms 0.8% operator new 0 0% 86.06% 2ms 0.54% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.06% 2ms 0.54% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 86.06% 2ms 0.54% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 86.06% 2ms 0.54% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 86.06% 2ms 0.54% KSPConvergedDefault 1ms 0.27% 86.33% 2ms 0.54% PetscHeaderCreate_Private 0 0% 86.33% 2ms 0.54% PetscHeaderDestroy_Private 0 0% 86.33% 2ms 0.54% PetscMallocA 0 0% 86.33% 2ms 0.54% PetscMallocAlign (partial-inline) 0 0% 86.33% 2ms 0.54% PetscMemzero (inline) 2ms 0.54% 86.86% 2ms 0.54% TimeStepper::CalculateNextTime 0 0% 86.86% 2ms 0.54% VecCreate 0 0% 86.86% 2ms 0.54% VecDestroy 2ms 0.54% 87.40% 2ms 0.54% VecRestoreArrayRead 0 0% 87.40% 2ms 0.54% XOpenDisplay 0 0% 87.40% 2ms 0.54% [hwloc_gl.so] 0 0% 87.40% 2ms 0.54% [hwloc_pci.so] 0 0% 87.40% 2ms 0.54% [libpciaccess.so.0.11.1] 0 0% 87.40% 2ms 0.54% [libxcb.so.1.1.0] 0 0% 87.40% 2ms 0.54% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 87.40% 2ms 0.54% _XConnectXCB 2ms 0.54% 87.94% 2ms 0.54% __GI___clock_nanosleep 0 0% 87.94% 2ms 0.54% __GI___nanosleep 0 0% 87.94% 2ms 0.54% __GI_getaddrinfo 0 0% 87.94% 2ms 0.54% __dlclose 0 0% 87.94% 2ms 0.54% __ieee754_pow_fma 2ms 0.54% 88.47% 2ms 0.54% __memset_evex_unaligned_erms 2ms 0.54% 89.01% 2ms 0.54% __mmap64 0 0% 89.01% 2ms 0.54% __pow 0 0% 89.01% 2ms 0.54% _dl_close 1ms 0.27% 89.28% 2ms 0.54% _dl_close_worker (inline) 0 0% 89.28% 2ms 0.54% _dl_map_segments (inline) 0 0% 89.28% 2ms 0.54% _dl_open_relocate_one_object (inline) 0 0% 89.28% 2ms 0.54% _dl_relocate_object 2ms 0.54% 89.81% 2ms 0.54% _int_malloc 0 0% 89.81% 2ms 0.54% boost::numeric::ublas::c_matrix::c_matrix (inline) 0 0% 89.81% 2ms 0.54% boost::numeric::ublas::indexing_matrix_assign 0 0% 89.81% 2ms 0.54% boost::numeric::ublas::matrix_assign (inline) 2ms 0.54% 90.35% 2ms 0.54% boost::numeric::ublas::same_impl_ex 0 0% 90.35% 2ms 0.54% elf_dynamic_do_Rela (inline) 0 0% 90.35% 2ms 0.54% elf_machine_rela (inline) 2ms 0.54% 90.88% 2ms 0.54% log_inline (inline) 0 0% 90.88% 2ms 0.54% mca_base_component_repository_release 0 0% 90.88% 2ms 0.54% mca_base_components_close 0 0% 90.88% 2ms 0.54% mca_base_framework_close 0 0% 90.88% 2ms 0.54% openaux 0 0% 90.88% 2ms 0.54% pci_get_strings 0 0% 90.88% 2ms 0.54% resolve_map (inline) 0 0% 90.88% 2ms 0.54% std::pow (inline) 0 0% 90.88% 2ms 0.54% usleep 0 0% 90.88% 2ms 0.54% xcb_connect_to_display_with_auth_info