File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3669ms, 86.59% of 4237ms total Dropped 432 nodes (cum <= 21.18ms) flat flat% sum% cum cum% 0 0% 0% 4230ms 99.83% __libc_start_call_main 0 0% 0% 4230ms 99.83% __libc_start_main_impl 0 0% 0% 4230ms 99.83% _start 0 0% 0% 4227ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4227ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4227ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4227ms 99.76% main 0 0% 0% 4193ms 98.96% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4193ms 98.96% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4193ms 98.96% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4187ms 98.82% AbstractCardiacProblem::Solve 2ms 0.047% 0.047% 4171ms 98.44% AbstractDynamicLinearPdeSolver::Solve 13ms 0.31% 0.35% 2360ms 55.70% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.38% 1507ms 35.57% LinearSystem::Solve 0 0% 0.38% 1451ms 34.25% KSPSolve 7ms 0.17% 0.54% 1451ms 34.25% KSPSolve_Private 1ms 0.024% 0.57% 1402ms 33.09% KSPSolve_SYMMLQ 40ms 0.94% 1.51% 1366ms 32.24% AbstractCardiacCell::ComputeExceptVoltage 33ms 0.78% 2.29% 1179ms 27.83% AbstractOneStepIvpOdeSolver::InternalSolve 60ms 1.42% 3.71% 962ms 22.70% EulerIvpOdeSolver::CalculateNextYValue 1ms 0.024% 3.73% 946ms 22.33% PCApply 1ms 0.024% 3.75% 940ms 22.19% PCApply_BJacobi_Singleblock 266ms 6.28% 10.03% 881ms 20.79% CellLuoRudy1991FromCellML::EvaluateYDerivatives 360ms 8.50% 18.53% 798ms 18.83% __GI___exp 0 0% 18.53% 796ms 18.79% KSPSolve_PREONLY (partial-inline) 19ms 0.45% 18.98% 762ms 17.98% AbstractCardiacTissue::UpdateCaches (inline) 4ms 0.094% 19.07% 749ms 17.68% MatSolve 0 0% 19.07% 749ms 17.68% PCApply_ICC 732ms 17.28% 36.35% 739ms 17.44% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 234ms 5.52% 41.87% 719ms 16.97% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 41.89% 715ms 16.88% KSP_PCApply.lto_priv.18 374ms 8.83% 50.72% 407ms 9.61% __ieee754_exp_fma 7ms 0.17% 50.89% 374ms 8.83% MatMult 2ms 0.047% 50.93% 364ms 8.59% MatMult_SeqAIJ 355ms 8.38% 59.31% 364ms 8.59% MatMult_SeqAIJ_Inode (inline) 0 0% 59.31% 293ms 6.92% KSP_PCApply (partial-inline) 2ms 0.047% 59.36% 285ms 6.73% KSPConvergedDefault 57ms 1.35% 60.70% 265ms 6.25% BidomainSolver::SetupLinearSystem 2ms 0.047% 60.75% 230ms 5.43% std::pow (inline) 18ms 0.42% 61.18% 228ms 5.38% __pow 22ms 0.52% 61.69% 209ms 4.93% __ieee754_pow_fma 75ms 1.77% 63.46% 178ms 4.20% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 63.49% 109ms 2.57% MatNullSpaceRemove 105ms 2.48% 65.97% 105ms 2.48% log_inline (inline) 1ms 0.024% 65.99% 98ms 2.31% VecDuplicate 56ms 1.32% 67.31% 91ms 2.15% TimeStepper::TimeStepper 21ms 0.5% 67.81% 82ms 1.94% MPI_Wtime 73ms 1.72% 69.53% 73ms 1.72% exp_inline (inline) 0 0% 69.53% 70ms 1.65% VecMDot 4ms 0.094% 69.62% 70ms 1.65% VecMXDot_Private 1ms 0.024% 69.65% 61ms 1.44% __GI___clock_gettime 60ms 1.42% 71.06% 60ms 1.42% [[vdso]] 6ms 0.14% 71.21% 59ms 1.39% PetscLogEventEndDefault 55ms 1.30% 72.50% 56ms 1.32% __ieee754_log_fma 10ms 0.24% 72.74% 55ms 1.30% PetscLogEventBeginDefault 53ms 1.25% 73.99% 53ms 1.25% ddot_ 9ms 0.21% 74.20% 50ms 1.18% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 74.23% 50ms 1.18% VecDuplicate_Seq 48ms 1.13% 75.36% 50ms 1.18% VecMDot_Seq 49ms 1.16% 76.52% 49ms 1.16% std::isinf (inline) 1ms 0.024% 76.54% 48ms 1.13% VecAXPY 2ms 0.047% 76.59% 48ms 1.13% VecDestroy 23ms 0.54% 77.13% 47ms 1.11% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 2ms 0.047% 77.18% 47ms 1.11% VecDuplicate_MPI 2ms 0.047% 77.22% 45ms 1.06% VecCreate 1ms 0.024% 77.25% 44ms 1.04% VecDot 10ms 0.24% 77.48% 43ms 1.01% PetscMallocA 0 0% 77.48% 43ms 1.01% VecNorm 41ms 0.97% 78.45% 41ms 0.97% TimeStepper::CalculateNextTime 7ms 0.17% 78.62% 41ms 0.97% VecCopy 21ms 0.5% 79.11% 40ms 0.94% top12 (inline) 33ms 0.78% 79.89% 38ms 0.9% AbstractOneStepIvpOdeSolver::Solve 2ms 0.047% 79.94% 38ms 0.9% VecMAXPY 0 0% 79.94% 38ms 0.9% VecNorm_Seq 0 0% 79.94% 37ms 0.87% VecDot_Seq 1ms 0.024% 79.96% 37ms 0.87% VecXDot_Seq_Private.constprop.0 36ms 0.85% 80.81% 36ms 0.85% [libchaste_heart.so] 36ms 0.85% 81.66% 36ms 0.85% __memcpy_avx_unaligned_erms 15ms 0.35% 82.02% 36ms 0.85% std::__cxx11::basic_string::basic_string 1ms 0.024% 82.04% 34ms 0.8% VecAXPY_Seq 0 0% 82.04% 33ms 0.78% PetscMallocAlign 9ms 0.21% 82.25% 32ms 0.76% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 82.25% 32ms 0.76% AbstractBidomainSolver::FinaliseLinearSystem 29ms 0.68% 82.94% 32ms 0.76% AbstractParameterisedSystem::SetAnyVariable 32ms 0.76% 83.69% 32ms 0.76% [libm.so.6] 30ms 0.71% 84.40% 30ms 0.71% daxpy_ 0 0% 84.40% 29ms 0.68% CxxTest::RealWorldDescription::setUp 0 0% 84.40% 29ms 0.68% PMPI_Init_thread 0 0% 84.40% 29ms 0.68% PetscInitialize 0 0% 84.40% 29ms 0.68% PetscSetup::setUpWorld 0 0% 84.40% 29ms 0.68% PetscSetupUtils::CommonSetup 0 0% 84.40% 29ms 0.68% PetscSetupUtils::InitialisePetsc 0 0% 84.40% 29ms 0.68% ompi_mpi_init 0 0% 84.40% 28ms 0.66% VecNorm_MPI 0 0% 84.40% 28ms 0.66% VecNorm_MPI_Default.constprop.0 0 0% 84.40% 27ms 0.64% PetscMemcpy (inline) 23ms 0.54% 84.94% 26ms 0.61% AbstractParameterisedSystem::GetAnyVariable 0 0% 84.94% 26ms 0.61% VecCreate_MPI_Private 4ms 0.094% 85.04% 25ms 0.59% PetscHeaderDestroy_Private 12ms 0.28% 85.32% 25ms 0.59% TimeStepper::AdvanceOneTimeStep 12ms 0.28% 85.60% 24ms 0.57% AbstractCardiacCell::GetVoltage (partial-inline) 2ms 0.047% 85.65% 24ms 0.57% __posix_memalign 1ms 0.024% 85.67% 23ms 0.54% 17ms 0.4% 86.08% 22ms 0.52% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 22ms 0.52% 86.59% 22ms 0.52% asuint64 (inline)