File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108233ms, 91.90% of 117772ms total Dropped 1096 nodes (cum <= 588.86ms) flat flat% sum% cum cum% 0 0% 0% 117756ms 100% __libc_start_call_main 0 0% 0% 117756ms 100% __libc_start_main_impl 0 0% 0% 117756ms 100% _start 0 0% 0% 117753ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 117753ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 117753ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 117753ms 100% main 0 0% 0% 117719ms 100% AbstractConvergenceTester::Converge 0 0% 0% 117719ms 100% CxxTest::RealTestDescription::run 0 0% 0% 117719ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 117719ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 117719ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 117719ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 6ms 0.0051% 0.0051% 116481ms 98.90% AbstractCardiacProblem::Solve 10ms 0.0085% 0.014% 115780ms 98.31% AbstractDynamicLinearPdeSolver::Solve 12ms 0.01% 0.024% 64461ms 54.73% LinearSystem::Solve 0 0% 0.024% 64020ms 54.36% KSPSolve 11ms 0.0093% 0.033% 64020ms 54.36% KSPSolve_Private 11ms 0.0093% 0.042% 63641ms 54.04% KSPSolve_SYMMLQ 214ms 0.18% 0.22% 42563ms 36.14% AbstractCardiacTissue::SolveCellSystems 4ms 0.0034% 0.23% 36616ms 31.09% PCApply 4ms 0.0034% 0.23% 36605ms 31.08% PCApply_BJacobi_Singleblock 1ms 0.00085% 0.23% 34200ms 29.04% KSPSolve_PREONLY (partial-inline) 1ms 0.00085% 0.23% 33071ms 28.08% PCApply_ICC 3ms 0.0025% 0.24% 33070ms 28.08% MatSolve 32561ms 27.65% 27.88% 33067ms 28.08% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1386ms 1.18% 29.06% 32770ms 27.82% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 29.06% 31545ms 26.78% KSP_PCApply.lto_priv.18 6803ms 5.78% 34.84% 28249ms 23.99% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 5ms 0.0042% 34.84% 21666ms 18.40% MatMult 245ms 0.21% 35.05% 21661ms 18.39% MatMult_SeqAIJ (partial-inline) 21210ms 18.01% 53.06% 21660ms 18.39% MatMult_SeqAIJ_Inode (inline) 1942ms 1.65% 54.71% 14700ms 12.48% CardiacNewtonSolver::Solve 292ms 0.25% 54.95% 8973ms 7.62% AbstractCardiacTissue::UpdateCaches (inline) 4364ms 3.71% 58.66% 8619ms 7.32% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1907ms 1.62% 60.28% 8475ms 7.20% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1185ms 1.01% 61.29% 7768ms 6.60% BidomainSolver::SetupLinearSystem 1111ms 0.94% 62.23% 7343ms 6.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00085% 62.23% 7142ms 6.06% KSP_PCApply (partial-inline) 3ms 0.0025% 62.23% 6518ms 5.53% KSPConvergedDefault 5964ms 5.06% 67.30% 5964ms 5.06% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3955ms 3.36% 70.65% 3999ms 3.40% __ieee754_log_fma 0 0% 70.65% 3715ms 3.15% boost::numeric::ublas::norm_inf (inline) 2475ms 2.10% 72.76% 3715ms 3.15% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.76% 3715ms 3.15% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.76% 3715ms 3.15% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 4ms 0.0034% 72.76% 3432ms 2.91% MatNullSpaceRemove 24ms 0.02% 72.78% 3156ms 2.68% std::pow (inline) 404ms 0.34% 73.12% 3128ms 2.66% __pow 1793ms 1.52% 74.65% 2957ms 2.51% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2940ms 2.50% 77.14% 2940ms 2.50% __memcpy_avx_unaligned_erms 0 0% 77.14% 2901ms 2.46% PetscMemcpy (inline) 357ms 0.3% 77.44% 2712ms 2.30% __ieee754_pow_fma 2504ms 2.13% 79.57% 2504ms 2.13% ddot_ 14ms 0.012% 79.58% 2422ms 2.06% VecCopy 5ms 0.0042% 79.59% 2406ms 2.04% VecCopy_Seq (partial-inline) 11ms 0.0093% 79.60% 2310ms 1.96% VecAXPY 5ms 0.0042% 79.60% 2299ms 1.95% VecAXPY_Seq 2278ms 1.93% 81.53% 2278ms 1.93% daxpy_ 4ms 0.0034% 81.54% 2044ms 1.74% AbstractFeVolumeIntegralAssembler::DoAssemble 4ms 0.0034% 81.54% 2020ms 1.72% VecDot 0 0% 81.54% 2016ms 1.71% VecDot_Seq 2ms 0.0017% 81.54% 2016ms 1.71% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.54% 1950ms 1.66% VecMDot 9ms 0.0076% 81.55% 1948ms 1.65% VecMXDot_Private 1932ms 1.64% 83.19% 1937ms 1.64% VecMDot_Seq 32ms 0.027% 83.22% 1685ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1502ms 1.28% 84.50% 1569ms 1.33% exp_inline (inline) 1509ms 1.28% 85.78% 1509ms 1.28% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 6ms 0.0051% 85.78% 1478ms 1.25% VecMAXPY 1470ms 1.25% 87.03% 1472ms 1.25% VecMAXPY_Seq 0 0% 87.03% 1399ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 87.03% 1143ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.03% 1143ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.03% 1143ms 0.97% boost_numeric_ublas_abs (inline) 1143ms 0.97% 88.00% 1143ms 0.97% std::abs (inline) 3ms 0.0025% 88.00% 1095ms 0.93% boost::numeric::ublas::matrix_assign (inline) 0 0% 88.00% 1089ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.00% 1089ms 0.92% CuboidMeshConstructor::Construct 1ms 0.00085% 88.00% 1089ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 211ms 0.18% 88.18% 1085ms 0.92% boost::numeric::ublas::indexing_matrix_assign 789ms 0.67% 88.85% 1042ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.85% 996ms 0.85% Element::Element 3ms 0.0025% 88.86% 995ms 0.84% AbstractTetrahedralElement::CalculateJacobian 966ms 0.82% 89.68% 966ms 0.82% __memset_avx2_unaligned_erms 0 0% 89.68% 958ms 0.81% PetscMemzero (inline) 0 0% 89.68% 944ms 0.8% AbstractTetrahedralElement::AbstractTetrahedralElement 3ms 0.0025% 89.68% 859ms 0.73% BidomainAssembler::ComputeMatrixTerm 3ms 0.0025% 89.68% 851ms 0.72% boost::numeric::ublas::c_matrix::c_matrix (inline) 836ms 0.71% 90.39% 836ms 0.71% [libchaste_heart.so] 1ms 0.00085% 90.39% 818ms 0.69% VecDuplicate 7ms 0.0059% 90.40% 793ms 0.67% VecScale 3ms 0.0025% 90.40% 786ms 0.67% VecScale_Seq 780ms 0.66% 91.06% 780ms 0.66% dscal_ 742ms 0.63% 91.69% 742ms 0.63% log_inline (inline) 3ms 0.0025% 91.69% 736ms 0.62% VecNorm 2ms 0.0017% 91.70% 718ms 0.61% VecNorm_Seq 12ms 0.01% 91.71% 694ms 0.59% PetscMallocA 2ms 0.0017% 91.71% 686ms 0.58% AbstractBidomainSolver::FinaliseLinearSystem 222ms 0.19% 91.90% 683ms 0.58% AbstractBidomainSolver::CheckCompatibilityCondition 3ms 0.0025% 91.90% 682ms 0.58% PetscMallocAlign (partial-inline) 1ms 0.00085% 91.90% 648ms 0.55% BidomainProblem::WriteOneStep 0 0% 91.90% 645ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)