File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3524ms, 86.95% of 4053ms total Dropped 487 nodes (cum <= 20.27ms) flat flat% sum% cum cum% 0 0% 0% 4044ms 99.78% __libc_start_call_main 0 0% 0% 4044ms 99.78% __libc_start_main_impl 0 0% 0% 4044ms 99.78% _start 0 0% 0% 4041ms 99.70% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4041ms 99.70% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4041ms 99.70% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4041ms 99.70% main 0 0% 0% 4003ms 98.77% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4003ms 98.77% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4003ms 98.77% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.025% 0.025% 3994ms 98.54% AbstractCardiacProblem::Solve 2ms 0.049% 0.074% 3976ms 98.10% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.074% 1955ms 48.24% LinearSystem::Solve 0 0% 0.074% 1920ms 47.37% KSPSolve 5ms 0.12% 0.2% 1920ms 47.37% KSPSolve_Private 1ms 0.025% 0.22% 1881ms 46.41% KSPSolve_CG 12ms 0.3% 0.52% 1695ms 41.82% AbstractCardiacTissue::SolveCellSystems 3ms 0.074% 0.59% 1240ms 30.59% PCApply 2ms 0.049% 0.64% 1227ms 30.27% PCApply_BJacobi_Singleblock 57ms 1.41% 2.05% 1116ms 27.54% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.025% 2.07% 1054ms 26.01% KSPSolve_PREONLY (partial-inline) 0 0% 2.07% 995ms 24.55% KSP_PCApply.lto_priv.7 207ms 5.11% 7.18% 989ms 24.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 1ms 0.025% 7.20% 988ms 24.38% PCApply_ICC 6ms 0.15% 7.35% 987ms 24.35% MatSolve 972ms 23.98% 31.33% 974ms 24.03% MatSolve_SeqSBAIJ_1_NaturalOrdering 11ms 0.27% 31.61% 534ms 13.18% AbstractCardiacTissue::UpdateCaches (inline) 5ms 0.12% 31.73% 507ms 12.51% MatMult 139ms 3.43% 35.16% 500ms 12.34% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1ms 0.025% 35.18% 498ms 12.29% MatMult_SeqAIJ 481ms 11.87% 47.05% 498ms 12.29% MatMult_SeqAIJ_Inode (inline) 41ms 1.01% 48.06% 461ms 11.37% CardiacNewtonSolver::Solve 0 0% 48.06% 341ms 8.41% KSP_PCApply (partial-inline) 2ms 0.049% 48.11% 340ms 8.39% KSPConvergedDefault 59ms 1.46% 49.57% 279ms 6.88% BidomainSolver::SetupLinearSystem 135ms 3.33% 52.90% 270ms 6.66% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 31ms 0.76% 53.66% 229ms 5.65% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 35ms 0.86% 54.53% 203ms 5.01% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 54.53% 197ms 4.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 42ms 1.04% 55.56% 197ms 4.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 1ms 0.025% 55.59% 165ms 4.07% std::pow (inline) 23ms 0.57% 56.16% 164ms 4.05% __pow 161ms 3.97% 60.13% 161ms 3.97% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 1ms 0.025% 60.15% 148ms 3.65% MatNullSpaceRemove 148ms 3.65% 63.80% 148ms 3.65% __ieee754_log_fma 23ms 0.57% 64.37% 141ms 3.48% __ieee754_pow_fma 0 0% 64.37% 134ms 3.31% boost::numeric::ublas::norm_inf (inline) 91ms 2.25% 66.62% 134ms 3.31% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 66.62% 134ms 3.31% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 66.62% 134ms 3.31% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 65ms 1.60% 68.22% 128ms 3.16% __GI___exp 124ms 3.06% 71.28% 124ms 3.06% ddot_ 0 0% 71.28% 99ms 2.44% VecMDot 8ms 0.2% 71.48% 99ms 2.44% VecMXDot_Private 2ms 0.049% 71.53% 95ms 2.34% VecTDot 0 0% 71.53% 88ms 2.17% VecDuplicate 18ms 0.44% 71.97% 84ms 2.07% MPI_Wtime 0 0% 71.97% 82ms 2.02% VecTDot_Seq 0 0% 71.97% 82ms 2.02% VecXDot_Seq_Private.constprop.0 72ms 1.78% 73.75% 73ms 1.80% exp_inline (inline) 0 0% 73.75% 67ms 1.65% VecNorm 2ms 0.049% 73.80% 66ms 1.63% __GI___clock_gettime 64ms 1.58% 75.38% 64ms 1.58% [[vdso]] 42ms 1.04% 76.41% 63ms 1.55% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 60ms 1.48% 77.89% 63ms 1.55% VecMDot_Seq 55ms 1.36% 79.25% 61ms 1.51% __ieee754_exp_fma 8ms 0.2% 79.45% 60ms 1.48% PetscLogEventEndDefault 1ms 0.025% 79.47% 58ms 1.43% VecDestroy 10ms 0.25% 79.72% 57ms 1.41% PetscLogEventBeginDefault 0 0% 79.72% 55ms 1.36% VecNorm_Seq 0 0% 79.72% 53ms 1.31% KSP_RemoveNullSpace (inline) 49ms 1.21% 80.93% 49ms 1.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1ms 0.025% 80.95% 48ms 1.18% VecMAXPY 1ms 0.025% 80.98% 44ms 1.09% VecDuplicate_MPI 0 0% 80.98% 44ms 1.09% VecDuplicate_Seq 4ms 0.099% 81.08% 42ms 1.04% PetscMallocA 40ms 0.99% 82.06% 40ms 0.99% log_inline (inline) 0 0% 82.06% 39ms 0.96% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 82.06% 39ms 0.96% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 82.06% 39ms 0.96% boost_numeric_ublas_abs (inline) 39ms 0.96% 83.02% 39ms 0.96% std::abs (inline) 4ms 0.099% 83.12% 38ms 0.94% PetscMallocAlign (partial-inline) 2ms 0.049% 83.17% 37ms 0.91% VecCreate 12ms 0.3% 83.47% 36ms 0.89% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 83.47% 36ms 0.89% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 83.47% 33ms 0.81% CxxTest::RealWorldDescription::setUp 0 0% 83.47% 33ms 0.81% PMPI_Init_thread 0 0% 83.47% 33ms 0.81% PetscInitialize 0 0% 83.47% 33ms 0.81% PetscSetup::setUpWorld 0 0% 83.47% 33ms 0.81% PetscSetupUtils::CommonSetup 0 0% 83.47% 33ms 0.81% PetscSetupUtils::InitialisePetsc 31ms 0.76% 84.23% 33ms 0.81% VecMAXPY_Seq 0 0% 84.23% 33ms 0.81% ompi_mpi_init 1ms 0.025% 84.26% 30ms 0.74% 30ms 0.74% 85.00% 30ms 0.74% [libchaste_heart.so] 6ms 0.15% 85.15% 27ms 0.67% VecCopy 2ms 0.049% 85.20% 25ms 0.62% VecCreate_MPI_Private 5ms 0.12% 85.32% 24ms 0.59% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 1ms 0.025% 85.34% 24ms 0.59% VecSetType 7ms 0.17% 85.52% 23ms 0.57% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#3}::operator() (inline) 4ms 0.099% 85.62% 23ms 0.57% __posix_memalign 22ms 0.54% 86.16% 22ms 0.54% DistributedVector::Iterator::operator!= 2ms 0.049% 86.21% 22ms 0.54% PetscHeaderDestroy_Private 4ms 0.099% 86.31% 22ms 0.54% VecAXPY 0 0% 86.31% 22ms 0.54% orte_init 0 0% 86.31% 21ms 0.52% PetscMemzero (inline) 5ms 0.12% 86.43% 21ms 0.52% __GI___libc_free 21ms 0.52% 86.95% 21ms 0.52% __memset_avx2_unaligned_erms